|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
ONIVA06G11490.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
MYB |
Protein Properties |
Length: 536aa MW: 60496.6 Da PI: 11.7741 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ONIVA06G11490.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 44.9 | 2.7e-14 | 39 | 84 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+WT+eEd l ++ + G+++W+++a+ m+ +R++ qc++rw+++l
ONIVA06G11490.1 39 AWTPEEDAALERLAVENGSRHWRRVAAQMPRKRSPVQCRDRWRDHL 84
6*****************************99***********986 PP
|
2 | Myb_DNA-binding | 43.5 | 7.3e-14 | 431 | 479 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
+WT+e+d l ++ ++G+++W+++a+ m+ +R++ qc++rw+++l
ONIVA06G11490.1 431 AWTPELDAVLERLAMEHGSRHWRRVAAQMPrhsSRRSPAQCRDRWRDHL 479
7*********************************************986 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 536 aa
Download sequence Send
to blast |
MAMMEPSSSS SSTASAVTPS SAPPSGRCCV VLRIKLPAAW TPEEDAALER LAVENGSRHW 60 RRVAAQMPRK RSPVQCRDRW RDHLARDVFH RPYTAADDDE LTRLVLRPGG GGDRWNDISR 120 AVHGRSSRSV KRRWMEIGTS DELLRKLWHP RSSMLSPATV VDAFPLSLSH PISHYSHFFY 180 RPEQALAAAV PANSSAPSAG NHPPQMRVVR EHMLPPTSLI SGHQSPSAPP PSPLYLFGKN 240 RNRRGRNEGR RRKRKRKRKA DRWAHEHLNL YLLFEYFRLF PKYPLATKKP PVGTLRLPWG 300 HSRFTIPDVG PPAKPKPKVE VLLLAPHASM RIVVGASLFP RPPQHAAQLV FGLCVILAAL 360 PPLTVVGSLF YFGWQPVVFQ GSDNQVAYLG FIRVGARQLS SSSSAASVFA SSSATSPPLG 420 RCVVRIRLPP AWTPELDAVL ERLAMEHGSR HWRRVAAQMP RHSSRRSPAQ CRDRWRDHLA 480 RDVFHRPFTA DDDAELARLC LRLDDGRSSR AVKRRWRELR KSDAFLGKLW RRPLSH
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 250 | 255 | RRKRKR |
2 | 250 | 256 | RRKRKRK |
3 | 250 | 258 | RRKRKRKRK |
4 | 252 | 258 | KRKRKRK |
5 | 253 | 258 | RKRKRK |
6 | 509 | 514 | RAVKRR |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |