PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G09010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 363aa MW: 38175.7 Da PI: 7.1939 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 7e-20 | 186 | 234 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++a+ +l+g ONIVA06G09010.1 186 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 234 9******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.0E-37 | 185 | 248 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-22 | 185 | 243 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.446 | 185 | 242 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-32 | 185 | 243 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.43E-31 | 186 | 242 | No hit | No description |
PRINTS | PR00367 | 6.5E-11 | 186 | 197 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-13 | 186 | 234 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-11 | 208 | 224 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MAAIDLYKYQ LSSSSSSSSS DQELMKALEP FIRSASPTST NTSTSTSTPL FYSSSSISTT 60 TTTPFSYSSP LPQESYYLPA SSSYAAIVPP PTTTTNTTTS FSELPPLPPS SSSFASPANA 120 AAVGLAHLGP EQIQQIQVQF LMQQQLQQRG MAASASASAA ASYLGPRAQP MKQAGAAAAA 180 AGGKMYRGVR QRHWGKWVAE IRLPKNRTRL WLGTFDTAED AALAYDKAAF RLRGDAARLN 240 FPTLRRGGAH LAGPLHASID AKLTAICHSL AAAPPASSKK AAAAAAHPDS PKGSASTTTT 300 TSEGDESAIS ACSPPLPPPP PPPPPALPEM ANLDFTEAPW DESDAFHLYK CPSWEIDWDS 360 ILS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 181 | 242 | 1 | 63 | ATERF1 |
3gcc_A | 3e-22 | 181 | 242 | 1 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644288.1 | 1e-148 | ethylene-responsive transcription factor RAP2-13 | ||||
TrEMBL | A0A0E0HMU9 | 0.0 | A0A0E0HMU9_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2YAT7 | 0.0 | A2YAT7_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA06G09010.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 2e-42 | related to AP2 4 |