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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G06770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 183aa MW: 19950 Da PI: 12.2236 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.4 | 1.7e-09 | 52 | 87 | 9 | 44 |
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 r+ +NRe+Arr R RK+ ++ L+ v+ L N ONIVA06G06770.1 52 RMLSNRESARRLRMRKQRHLDDLTAQVAHLRRDNAH 87 89*****************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.8E-7 | 35 | 108 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.6E-8 | 52 | 120 | No hit | No description |
Pfam | PF00170 | 1.4E-7 | 52 | 88 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.31E-15 | 52 | 97 | No hit | No description |
SuperFamily | SSF57959 | 4.78E-9 | 52 | 98 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 52 | 66 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MGRGRRDVGG RRGKRRRAVA RRIPFPSSLS LSLSLGAQGR EVGGGASGGG GRMLSNRESA 60 RRLRMRKQRH LDDLTAQVAH LRRDNAHVTT ALGLTTQGLL AVDAENAVLR TQAAELAARL 120 ASLNDILSSP CLTAEAAMAE TNNKKKKIYL PLGVILAFRK NTRHFQPGNN KIMHSVPVNF 180 TYF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 67 | RRLRMRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0HM06 | 1e-128 | A0A0E0HM06_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G06770.1 | 1e-129 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34590.1 | 8e-22 | G-box binding factor 6 |