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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G05580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 496aa MW: 54404 Da PI: 8.6065 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.8 | 7.6e-15 | 55 | 105 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVrw+ grWv+ +r+p g + rf++g+ +taee a+ ++aa+++l g ONIVA06G05580.1 55 FRGVRWRGCAGRWVCKVRVP---GsRGDRFWIGTSDTAEETARTHDAAMLALCG 105 8******************9...5445***********************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-21 | 54 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-10 | 54 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.884 | 54 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-12 | 54 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-13 | 54 | 115 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.93E-20 | 55 | 115 | No hit | No description |
Gene3D | G3DSA:3.40.50.150 | 1.4E-85 | 267 | 494 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
PROSITE profile | PS51682 | 75.68 | 271 | 495 | IPR002935 | O-methyltransferase, family 3 |
SuperFamily | SSF53335 | 1.39E-44 | 274 | 494 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF01596 | 4.2E-100 | 284 | 494 | IPR002935 | O-methyltransferase, family 3 |
CDD | cd02440 | 2.84E-4 | 334 | 435 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009805 | Biological Process | coumarin biosynthetic process | ||||
GO:0032259 | Biological Process | methylation | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042409 | Molecular Function | caffeoyl-CoA O-methyltransferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MILVELLLSS YVAHVMEKNT AASGQLMTSS AEATPSSLKR PAGRTKFQET RHLVFRGVRW 60 RGCAGRWVCK VRVPGSRGDR FWIGTSDTAE ETARTHDAAM LALCGASASL NFADSAWLLH 120 VPRAPVVSGL RPLAARCATR CLQGHRRVPA PGRGSTATAT ATSGDAASTA PPSAPVLSAK 180 QCEFIFLSSL DFHMLFSHSS AALYKPREAS LPRRRSQSGD PRRARDRSKL LHRSHDMAEA 240 ASAAAAATTE QANGSSGGEQ KTRHSEVGHK SLLKSDDLYQ YILETSVYPR EHECMKELRE 300 VTANHPWNLM TTSADEGQFL NLLLKLIGAK KTMEIGVYTG YSLLATALAI PDDGTILAMD 360 INRENYELGL PSIEKAGVAH KIDFREGPAL PVLDQLVEEE GNHGSFDFVF VDADKDNYLN 420 YHERLMKLVK VGGLVGYDNT LWNGSVVLPA DAPMRKYIRY YRDFVLELNK ALAADHRVEI 480 CQLPVGDGIT LCRRVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5kva_A | 1e-155 | 253 | 496 | 35 | 278 | caffeoyl-CoA O-methyltransferase |
5kva_B | 1e-155 | 253 | 496 | 35 | 278 | caffeoyl-CoA O-methyltransferase |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065744 | 0.0 | AK065744.1 Oryza sativa Japonica Group cDNA clone:J013039L12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643224.1 | 0.0 | caffeoyl-CoA O-methyltransferase 1 | ||||
Swissprot | Q9XGD5 | 1e-160 | CAMT2_MAIZE; Caffeoyl-CoA O-methyltransferase 2 | ||||
TrEMBL | A0A0E0HLM2 | 0.0 | A0A0E0HLM2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G05580.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 2e-27 | dehydration response element B1A |