|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
ONIVA05G13470.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
MYB |
Protein Properties |
Length: 303aa MW: 31496.1 Da PI: 7.1317 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ONIVA05G13470.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 61 | 2.5e-19 | 20 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+W++eEde+l av+++G+++W++I+++++ gR++k+c++rw +
ONIVA05G13470.1 20 KGSWSPEEDEQLRGAVARHGPRNWTAISEEVP-GRSGKSCRLRWCNQ 65
799*****************************.***********985 PP
|
2 | Myb_DNA-binding | 57.2 | 3.9e-18 | 72 | 115 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r ++T++Ed l+v a++++G++ W+tIar + gRt++++k++w++
ONIVA05G13470.1 72 RRPFTPDEDALIVAAHAKYGNK-WATIARLLD-GRTDNSVKNHWNS 115
679*******************.*********.***********96 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MLIHGEGSSS SAAAAGGKIK GSWSPEEDEQ LRGAVARHGP RNWTAISEEV PGRSGKSCRL 60 RWCNQLSPGV HRRPFTPDED ALIVAAHAKY GNKWATIARL LDGRTDNSVK NHWNSSLRRN 120 RRAAAAAAAA AASVSYQSMD LTEEADNDDE GTSDDSVAIP AQSSPAAVVA GVPVLPPPPP 180 PAKRLCVAPP TGVEHRAPPP DPPTSLSLSP PGAAAAAISA STVVGGSSAA RAEEEAVARE 240 KARMEQDPWL MAMMRQMITE EVQRQVSVVY SLVASSAAVA AQTGNAGGVG RKGPDGRPSN 300 GQD
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC136221 | 0.0 | AC136221.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0077J17, complete sequence. |
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |