PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G39120.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 640aa    MW: 68314 Da    PI: 6.8404
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G39120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-12291347155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++ +g  rk  + g ++t+++Aa+a++ a++k++g
  ONIVA02G39120.1 291 SQYRGVTRHRWTGRYEAHLWDnSCKkDGqTRKGRQ-GGYDTEDKAARAYDLAALKYWG 347
                      78*******************88888885446656.77***99*************97 PP
2AP246.87.1e-15390441155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  ONIVA02G39120.1 390 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 441
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-14291357IPR016177DNA-binding domain
CDDcd000188.51E-18291355No hitNo description
PfamPF008471.4E-9291347IPR001471AP2/ERF domain
PROSITE profilePS5103217.662292355IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-12292356IPR001471AP2/ERF domain
SMARTSM003802.1E-21292361IPR001471AP2/ERF domain
PRINTSPR003674.8E-6293304IPR001471AP2/ERF domain
CDDcd000181.00E-23390451No hitNo description
SuperFamilySSF541711.44E-17390450IPR016177DNA-binding domain
PfamPF008478.9E-10390441IPR001471AP2/ERF domain
PROSITE profilePS5103219.045391449IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-18391449IPR001471AP2/ERF domain
SMARTSM003801.3E-33391455IPR001471AP2/ERF domain
PRINTSPR003674.8E-6431451IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MASGGGSSNW LGFSLSPHMP AMEVPSSSEP STAAHHHHHH HPPAAAAAAG AMSSPPDSAT  60
TCNFLFSPPA AQMVAPSPGY YYVGGAYGDG TSTAGVYYSH LPVMPIKSDG SLCIMEVGMM  120
PSSSPKLEDF LGCGNGSGHD PATYYSQGQE AEDASRAAYQ HHQLVPYNYQ PLTEAEMLQE  180
AAAAPMEDAM AAAKNFLVTS YGACYGNQEM PQPLSLSMSP GSQSSSCVSA APQQHQQMAV  240
VAAAAAAGDG QGSNSNDGGE QRVGKKRGTG KGGQKQPVHR KSIDTFGQRT SQYRGVTRHR  300
WTGRYEAHLW DNSCKKDGQT RKGRQGGYDT EDKAARAYDL AALKYWGLST HINFPLENYR  360
DEIGEMERMT RQEYVAHLRR RSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  420
TFSTQEEAAE AYDIAAIKFR GLNAVTNFDI TRYDVDKIME SSSLLPGEAA RKVKAIEAAP  480
DHVPIGRELG ATEEASAATV TGTDWRMVLH GSQQQQAAAC TEATADLQKG FMGDAHSALH  540
GIVGFDVESA AADEIDVPGG KISGINFSNS SSLVTSLSNS REGSPERLGL AMLYAKHHPT  600
AVSLAAMNPW MPMPAPAAAH VMRPPSAIAH LPVFAAWTDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063060.0AK106306.1 Oryza sativa Japonica Group cDNA clone:002-101-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629410.10.0AP2-like ethylene-responsive transcription factor CRL5 isoform X2
SwissprotQ84Z021e-145CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0E0GEH60.0A0A0E0GEH6_ORYNI; Uncharacterized protein
STRINGONIVA02G39120.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-102AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]