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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G27820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 471aa MW: 50476.4 Da PI: 8.6281 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.9e-19 | 223 | 273 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge ONIVA02G27820.1 223 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 273 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.48E-32 | 222 | 282 | No hit | No description |
SuperFamily | SSF54171 | 5.1E-23 | 223 | 281 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.9E-39 | 223 | 286 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-32 | 223 | 281 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.998 | 223 | 280 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-12 | 224 | 273 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-11 | 224 | 235 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-11 | 246 | 262 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MDAVDRGGGG GGGGARGHGR RWKGKGVSAA ISSSAAETQQ PVPVLEDAPA AAALLRPQKK 60 IRSPDRRLQR SISSLSSAPA SPDSSSVSNP MSPPAMSLPN QPPSSRHIFP FAYDPSPGAA 120 APRLLPLLQY SSLYPQPLLP QQQSPLQNQQ MISFGSSQQQ QQPQFGAASP LFPPQFLPPE 180 EQQRLLLRYW SEALNLSPRG VRGGALRPSL YQHLLRAPGP PKLYRGVRQR HWGKWVAEIR 240 LPRNRTRLWL GTFDTAEDAA MAYDREAFKL RGENARLNFP DLFLGKGRTG GSGRTSASAA 300 ASCSSSSSSA PPTPDESHTQ QAQPQPQQPT EESSNTEPKP LLFVAEQDGI PEPELNPQLQ 360 TAEQHGNDGN TAMFQPSVTS GGIWGPADEA WFSAWGPGSS VWDYDMDSAH GLLLQSRLAG 420 EQTGMDYAYT APEVLVAPVP AAGTAMATAA SSSLPPRPPP PCHSPTFAWK D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 222 | 280 | 4 | 63 | ATERF1 |
3gcc_A | 1e-19 | 222 | 280 | 4 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00458 | DAP | Transfer from AT4G28140 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627619.1 | 0.0 | ethylene-responsive transcription factor ERF054 | ||||
TrEMBL | A0A0E0GA85 | 0.0 | A0A0E0GA85_ORYNI; Uncharacterized protein | ||||
TrEMBL | B8AFU5 | 0.0 | B8AFU5_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA02G27820.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3691 | 32 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-37 | ERF family protein |