PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G04630.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 274aa MW: 30652.2 Da PI: 5.8268 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.4e-19 | 75 | 124 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r +r +lg+f ta eAa a+++a+++++g ONIVA01G04630.3 75 AYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGSFPTALEAAHAYDEAARAMYG 124 59****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.8E-13 | 74 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 75 | 133 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-33 | 75 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.825 | 75 | 132 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.03E-29 | 76 | 134 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.7E-31 | 76 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-9 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-9 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MERGEGRRGD CSVQVRKKRT RRKSDGPDSI AETIKWWKEQ NQKLQEENSS RKAPAKGSKK 60 GCMAGKGGPE NSNCAYRGVR QRTWGKWVAE IREPNRGRRL WLGSFPTALE AAHAYDEAAR 120 AMYGPTARVN FADNSTDANS GCTSAPSLMM SNGPATIPSD EKDELESPPF IVANGPAVLY 180 QPDKKDVLER VVPEVQDVKT EGSNGLKRVC QERKTMEVCE SEGIVLHKEV NISYDYFNVH 240 EVVEMIIVEL SADQKTEVHE EYQEGDDGFS LFSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-14 | 76 | 131 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 1e-13 | 76 | 131 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF300971 | 0.0 | AF300971.2 Oryza sativa DRE binding protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878770.1 | 0.0 | dehydration-responsive element-binding protein 2A | ||||
Swissprot | A2WL19 | 0.0 | DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A | ||||
TrEMBL | A0A0E0BXK1 | 0.0 | A0A0E0BXK1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0FGQ1 | 0.0 | A0A0E0FGQ1_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0MRS9 | 0.0 | A0A0E0MRS9_ORYRU; Uncharacterized protein | ||||
STRING | OMERI01G04060.1 | 0.0 | (Oryza meridionalis) | ||||
STRING | ORUFI01G04360.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 3e-35 | ERF family protein |