PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G05820.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 312aa    MW: 32817.8 Da    PI: 5.1072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G05820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19111161256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      +++GVr ++ +g+W+AeIrdp+    r  r++lg+f tae Aa+a++aa+++l+g+
  OMERI10G05820.1 111 RFRGVRKRP-WGKWAAEIRDPV----RgVRVWLGTFPTAESAARAYDAAARRLRGA 161
                      69*******.**********63....56**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.4E-35111174IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-21111168IPR016177DNA-binding domain
PfamPF008474.5E-13111160IPR001471AP2/ERF domain
PROSITE profilePS5103224.395111168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-31111169IPR001471AP2/ERF domain
PRINTSPR003679.0E-11112123IPR001471AP2/ERF domain
CDDcd000188.78E-13117168No hitNo description
PRINTSPR003679.0E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MCGGAILADL IPAPRSGAQT NKNKRRRISD DEDFEAAFEE FDAGDDDDSD SDSEEVDEYD  60
VVNDDDDSED GVVVLPPPFG DKRMCPVIPH GGGRGSGMAA RRRGDGGGAR RFRGVRKRPW  120
GKWAAEIRDP VRGVRVWLGT FPTAESAARA YDAAARRLRG AKAKPNFPSA PPPSAAHRRK  180
KRRARAHAAT RSPSSPSATT SEVTATSASA SSNTPTPALA AFVGEPGHGG AKSMPSPPAT  240
ASAVASENVD DPEVFDPYDI HGGLASYFAG GAYESLESLF AHGGDSAAVD QAASDHWPAG  300
LWSFADDGSF CF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-19110168463ATERF1
3gcc_A7e-19110168463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12327KRRRI
2101118RRGDGGGARRFRGVRKRP
3178184RKKRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8332600.0CT833260.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123I24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613362.22e-97ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0EX950.0A0A0E0EX95_9ORYZ; Uncharacterized protein
STRINGOMERI10G05590.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151951415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.16e-10ERF family protein