 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OMERI08G02010.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
LSD |
| Protein Properties |
Length: 147aa MW: 15858.3 Da PI: 9.02 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OMERI08G02010.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 27.7 | 4.4e-09 | 47 | 69 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23
C+gC tlL Y rGA+++RC++C+
OMERI08G02010.1 47 CSGCPTLLFYNRGASNIRCPSCN 69
**********************8 PP
|
| 2 | zf-LSD1 | 32.5 | 1.4e-10 | 85 | 109 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Crt+L+ P+GA+ V+Ca C V
OMERI08G02010.1 85 CGQCRTTLMHPPGASTVQCATCRYV 109
**********************876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 147 aa
Download sequence Send
to blast |
MQDQLICSGC RRVVQYRRGV TGVCCPGCNT LTAVNPSAAA GMSELICSGC PTLLFYNRGA 60
SNIRCPSCNR LNSTRSANQI AHLTCGQCRT TLMHPPGAST VQCATCRYVN HVRDARPQTV 120
LVENPKTLDD KGKLVSNVVV GVTSWKR
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK120454 | 0.0 | AK120454.1 Oryza sativa Japonica Group cDNA clone:J013104B05, full insert sequence. |
| GenBank | CT830765 | 0.0 | CT830765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA016M05, full insert sequence. |
