PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G17280.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 346aa    MW: 36630.6 Da    PI: 4.5106
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G17280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.74.1e-27182238257
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                       D ++WrKYGqK++kgs++pr+YYrC+++ +C ++k+ver++ dp+++  tY+g H 
  OMERI06G17280.1 182 PDSWAWRKYGQKPIKGSPYPRGYYRCSTNkTCAARKQVERCRLDPSFLLLTYTGAHS 238
                      599***********************99989*************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-27172238IPR003657WRKY domain
SuperFamilySSF1182903.14E-23176239IPR003657WRKY domain
PROSITE profilePS5081127.737176243IPR003657WRKY domain
SMARTSM007741.6E-30181242IPR003657WRKY domain
PfamPF031069.5E-22183238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDGDAWWYAG GGGGGGSNNW DLGAVVRFGC GGGRVSPAAT LLGEAWEYDD DPFSSFLAPP  60
MTAQQAALPA VWEEGDDGDA AWMAPLPGLQ AGGWGDQAPM VVDELCGPLV VAPPPPPPKQ  120
QEVLQVQPPP PPPADKTQPT TDQQGSGGDS EGARAGGSRS ARRKKKLIRK EVVRVAASGP  180
APDSWAWRKY GQKPIKGSPY PRGYYRCSTN KTCAARKQVE RCRLDPSFLL LTYTGAHSGH  240
DVPLHRNSLA GTTRHKPPLP SADKSPATAA EAATSQSPGL SPTTPLRASS MELHGEDDAE  300
AELQVEEDDM AIDDKDDDDV ADETISTVPW GTPISDAIIA ASYEWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-151832431977Probable WRKY transcription factor 4
2lex_A3e-151832431977Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166RRKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881961.10.0WRKY transcription factor 22-like
TrEMBLA0A0E0E2B00.0A0A0E0E2B0_9ORYZ; Uncharacterized protein
STRINGOMERI06G15970.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-39WRKY family protein