PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G09360.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 356aa    MW: 37611 Da    PI: 7.1939
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G09360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-20177225355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  OMERI06G09360.1 177 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 225
                      9******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-32176234IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22176234IPR016177DNA-binding domain
SMARTSM003805.0E-37176239IPR001471AP2/ERF domain
PROSITE profilePS5103223.446176233IPR001471AP2/ERF domain
CDDcd000184.11E-31177233No hitNo description
PfamPF008473.4E-13177225IPR001471AP2/ERF domain
PRINTSPR003676.3E-11177188IPR001471AP2/ERF domain
PRINTSPR003676.3E-11199215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAAIDLYKYQ LSSSSSSSSS DQELMKALEP FIRSASPTST STSTSTSTPL FYSSSSISTT  60
TTTTTPFSYS SPLPQESYYI PASSSYAIVP PPTTTTNTSF SELPPLPPSS SSFASPANAA  120
AVGLAHLGPE QIQQIQVQFL MQQQQQRGMA ASYLGPRAQP MKQAGAAAAA SAGGKMYRGV  180
RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE DAALAYDKAA FRLRGDAARL NFPTLRRGGA  240
HLAGPLHASI DAKLTAICHS LAAAPPASSS SKKAAAAAAH PDSPKGSAST TTTTSEGDES  300
AISACSPPLP PPPPPPPAVL PEMANLDFTE APWDESDAFH LYKCPSWEID WDSILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22172233163ATERF1
3gcc_A1e-22172233163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047270.0AP004727.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0516A04.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCT8290470.0CT829047.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120K06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644288.11e-139ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0E0DZ860.0A0A0E0DZ86_9ORYZ; Uncharacterized protein
STRINGOPUNC06G07470.11e-157(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.15e-43related to AP2 4