PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G16180.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 338aa    MW: 36565.9 Da    PI: 6.3788
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G16180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17161208555
              AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      GVr ++ +g+++AeIrd + ng  +r++lg+f t+e+Aa a+++a+++ +g
  OMERI05G16180.1 161 GVRKRP-WGKYAAEIRDSTRNG--ARVWLGTFNTPEQAALAYDQAALSVRG 208
                      9*****.**********44465..***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.705158216IPR001471AP2/ERF domain
PRINTSPR003671.4E-7159170IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-20160217IPR016177DNA-binding domain
CDDcd000181.43E-21161216No hitNo description
SMARTSM003807.9E-29161222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-26161217IPR001471AP2/ERF domain
PfamPF008477.3E-12161208IPR001471AP2/ERF domain
PRINTSPR003671.4E-7182198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEPNYSDYHP NSVPFDAYYE HGHRHLDDHG HGHHHLIPAH PEPSYSYGNW SFLHADATAT  60
SSSESSSASA SSGAAHIVGA SGPSASFVRQ LHFGGEYYDG DAADIRAHME AASISCAWTT  120
NGGASTSQTT GLEGVEVRRA AAPEPDNGSS DKEEAARPLI GVRKRPWGKY AAEIRDSTRN  180
GARVWLGTFN TPEQAALAYD QAALSVRGPG AVLNYPLHRV RESLRTLELG AAAASESPVL  240
ALKRRHRIRK RSTTKKAPAG KEADEAPATT SSEGKKKRQV NTTSHRHDGK QDQTSSPRVL  300
ELEDLGTDYL EELLALSEEQ PETPPAIADY TIELEHCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22161218865ATERF1
3gcc_A2e-22161218865ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306020.0AC130602.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1122D01, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638626.10.0ethylene-responsive transcription factor ERF094
TrEMBLA0A0E0DS900.0A0A0E0DS90_9ORYZ; Uncharacterized protein
STRINGOMERI05G15370.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-39ethylene response factor 1