PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G10910.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 913aa    MW: 102096 Da    PI: 7.4011
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G10910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1129.51.3e-408416536117
             CG-1  36 sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117
                       g+++Ly+rk+vr+frkDG++wkkkkdg+tv+E+hekLK+g+ e +++yYa++e++p+f rrcywlL+++le+ivlvhy+++
  OMERI04G10910.1  84 GGTVVLYDRKVVRNFRKDGHNWKKKKDGRTVQEAHEKLKIGNEERVHVYYARGEDDPNFFRRCYWLLDKDLERIVLVHYRQT 165
                      699****************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143768.45826171IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-5429166IPR005559CG-1 DNA-binding domain
PfamPF038591.7E-3385164IPR005559CG-1 DNA-binding domain
SuperFamilySSF812964.34E-10394480IPR014756Immunoglobulin E-set
PROSITE profilePS5029715.433562666IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.1E-14569660IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.68E-13575658IPR020683Ankyrin repeat-containing domain
PfamPF127964.2E-7579658IPR020683Ankyrin repeat-containing domain
CDDcd002041.32E-10580654No hitNo description
PROSITE profilePS5008811.835595627IPR002110Ankyrin repeat
SMARTSM002489.6E-6595624IPR002110Ankyrin repeat
SMARTSM00248580634663IPR002110Ankyrin repeat
SuperFamilySSF525407.17E-9711812IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500966.54746772IPR000048IQ motif, EF-hand binding site
SMARTSM000151.5761783IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.785762789IPR000048IQ motif, EF-hand binding site
PfamPF006120.002764782IPR000048IQ motif, EF-hand binding site
SMARTSM000150.016784806IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.274785809IPR000048IQ motif, EF-hand binding site
PfamPF006120.0091787806IPR000048IQ motif, EF-hand binding site
SMARTSM000152.4867889IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.084869897IPR000048IQ motif, EF-hand binding site
PfamPF006120.043870889IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MAGAGGWDPL VGSEIHGFLT YADLSYEKLV AEAAARWFRP NEIYAILANH ARFKIHAQPV  60
DKPVSMCSCT LRPSCTCHGL FLDGGTVVLY DRKVVRNFRK DGHNWKKKKD GRTVQEAHEK  120
LKIGNEERVH VYYARGEDDP NFFRRCYWLL DKDLERIVLV HYRQTAEENA MAPPNPEPEV  180
ADVPTVNLIH YTSPLTSADS TSAHTELSLP EEINSHGGIS ASSETGNHDS SLEEFWANLL  240
ESSIKNDPKI VTSACGGSFA SSQQINNGPK NSGNIFNTSM ASNAIPALNV VSETYVTNHG  300
LNQVNANHFG ALKHQGDQTQ SLLTSDVDSQ SDQFISSSVK SPMDGNTSIP NEVPARQNSL  360
GLWKYLDDDS PGLGDNPSSV PQSFCPVTNE RLLEINEISP EWAYSTETTK VVVIGNFYEQ  420
YKHLTGSAMF GVFGDQCVAG DIVQTGVYRF MVGPHTPGKV DFYLTLDGKT PISEICSFTY  480
HVMHGSSLEA RLPPSEDDYK RTNLQMQMRL ARLLFATNKK KIAPKLLVEG TKVANLMSAL  540
PEKEWMDLWN ILSDPEGTYV PVTESLLELV LRNRLQEWLV EMVMEGFSLD FRDSSGWTAL  600
HWAAYHGRER MVATLLSAGA NPSLVTDPTP ESPAGLTAAD LAARQGYDGL AAYLAEKGLT  660
AHFEAMSLSK DTEQSPSKTR LTKLQSEKFE NLSEQELCLK ESLAAYRNAA DAASNIQAAL  720
RERTLKLQTK AIQLANPEIE ASEIVAAMKI QHAFRNYNRK KAMRAAARIQ SHFRTWKMRR  780
NFINMRRQVI RIQAAYRGHQ VRRQYRKVIW SVGIVEKAIL RWRKKRKGLR GIASGMPVVM  840
TVDAEAEPAS TAEEDFFQAG RQQAEDRFNR SVVRVQALFR SYKAQQEYRR MKIAHEEAKI  900
EFSEGQLGAA CRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709760.0AK070976.1 Oryza sativa Japonica Group cDNA clone:J023073E17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646432.10.0calmodulin-binding transcription activator CBT-like isoform X2
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A0E0DE180.0A0A0E0DE18_9ORYZ; Uncharacterized protein
STRINGOS07T0490200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators