PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G36740.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 959aa MW: 104554 Da PI: 5.1719

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G36740.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130	8.4e-41	151	228	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+adl+ +++yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ OMERI03G36740.2 151 ACQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCSRFHPLQEFDEGKRSCRRRLAGHNRRRRKTRP 228 5**************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.3E-34	145	213	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.394	149	226	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-38	150	230	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-30	152	225	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.02E-8	740	846	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.1E-7	743	849	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.20E-9	746	846	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 959 aa Download sequence Send to blast
MEAARVGAQS RHLYGGGLGE PDMDRRDKRL FGWDLNDWRW DSDRFVATPV PTAEASGLAL 60 NSSPSSSEEA GAALVRNVNA RGDSDKRKRV VVIDDDDVED DELVENGGGS LSLRIGGDAV 120 ANGAGVGGGA DEEDRNGKKI RVQGGSPSGP ACQVEGCTAD LTGVRDYHRR HKVCEMHAKA 180 TTAVVGNTVQ RFCQQCSRFH PLQEFDEGKR SCRRRLAGHN RRRRKTRPEV AVGGSAFTED 240 KDSTIVLAAD TAEHLRGQEL LSGLLRNLGA VAKSLDPKEL CKLLEACQSM QDGSNAGTSE 300 TANALVNTAV AEAAGPSNSK MPFVNGDQCG LASSSVVPVQ SKSPTVATPD PPACKFKDFD 360 LNDTCGGMEG FEDGYEGSPT PAFKTTDSPN CPSWMHQDST QSPPQTSGNS DSTSAQSLSS 420 SNGDAQCRTD KIVFKLFEKV PSDLPPVLRS QILGWLSSSP TDIESYIRPG CIILTVYLRL 480 VEPAWKELSD NMSSYLDKLL NSSTGNFWAS GLVFVMVRHQ IAFMHNGQLM LDRPLANSAH 540 HYCKILCVRP IAAPFSTKVN FRVEGLNLVS DSSRLICSFE GSCIFQEDTD NIVDDAEHDD 600 IEYLNFCCPL PSSRGRGFVE VEDGGFSNGF FPFIIAEQDI CSEVCELESI FESSSHEQAD 660 DDNARNQALE FLNELGWLLH RANIISKQNK VPLASFNIWR FRNLGIFAME REWCAVTKLL 720 LDFLFIGLVD IGSQSPEEVV LSENLLHAAV RMKSAQMVRF LLGYKPNESL KGTAETFLFR 780 PDAQGPSKFT PLHIAAATDD AEDVLDALTN DPGLVGINVW RNARDDAGFT PEDYARQRGN 840 DAYLNMVEKK INKHLGKGHV VLGVPSSIHP VITDGVKPGE VSLEIGMSVP PPAPRCNACS 900 RQALMYPNSM ARTFLYRPAM LTVMGIAVIC VCVGLLLHTC PKVYAAPTFR WELLERGPM

Sequence ? help Back to Top

Protein Sequence Length: 959 aa Download sequence Send to blast

MEAARVGAQS RHLYGGGLGE PDMDRRDKRL FGWDLNDWRW DSDRFVATPV PTAEASGLAL  60
NSSPSSSEEA GAALVRNVNA RGDSDKRKRV VVIDDDDVED DELVENGGGS LSLRIGGDAV  120
ANGAGVGGGA DEEDRNGKKI RVQGGSPSGP ACQVEGCTAD LTGVRDYHRR HKVCEMHAKA  180
TTAVVGNTVQ RFCQQCSRFH PLQEFDEGKR SCRRRLAGHN RRRRKTRPEV AVGGSAFTED  240
KDSTIVLAAD TAEHLRGQEL LSGLLRNLGA VAKSLDPKEL CKLLEACQSM QDGSNAGTSE  300
TANALVNTAV AEAAGPSNSK MPFVNGDQCG LASSSVVPVQ SKSPTVATPD PPACKFKDFD  360
LNDTCGGMEG FEDGYEGSPT PAFKTTDSPN CPSWMHQDST QSPPQTSGNS DSTSAQSLSS  420
SNGDAQCRTD KIVFKLFEKV PSDLPPVLRS QILGWLSSSP TDIESYIRPG CIILTVYLRL  480
VEPAWKELSD NMSSYLDKLL NSSTGNFWAS GLVFVMVRHQ IAFMHNGQLM LDRPLANSAH  540
HYCKILCVRP IAAPFSTKVN FRVEGLNLVS DSSRLICSFE GSCIFQEDTD NIVDDAEHDD  600
IEYLNFCCPL PSSRGRGFVE VEDGGFSNGF FPFIIAEQDI CSEVCELESI FESSSHEQAD  660
DDNARNQALE FLNELGWLLH RANIISKQNK VPLASFNIWR FRNLGIFAME REWCAVTKLL  720
LDFLFIGLVD IGSQSPEEVV LSENLLHAAV RMKSAQMVRF LLGYKPNESL KGTAETFLFR  780
PDAQGPSKFT PLHIAAATDD AEDVLDALTN DPGLVGINVW RNARDDAGFT PEDYARQRGN  840
DAYLNMVEKK INKHLGKGHV VLGVPSSIHP VITDGVKPGE VSLEIGMSVP PPAPRCNACS  900
RQALMYPNSM ARTFLYRPAM LTVMGIAVIC VCVGLLLHTC PKVYAAPTFR WELLERGPM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-31	145	225	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072164	0.0	AK072164.1 Oryza sativa Japonica Group cDNA clone:J013130O11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631511.1	0.0	squamosa promoter-binding-like protein 6 isoform X1
Swissprot	Q75LH6	0.0	SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBL	A0A0E0D958	0.0	A0A0E0D958_9ORYZ; Uncharacterized protein
STRING	OGLUM03G39810.1	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]