PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G31070.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 375aa    MW: 40824.5 Da    PI: 4.7183
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G31070.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.81.7e-33551452101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+ye+++d+ ++++isw   gnsfvv+d + fa  +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkke l+
  OMERI03G31070.3  55 FLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKEFLK 139
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +ikr++
  OMERI03G31070.3 140 TIKRRR 145
                      ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-3651144IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.5E-5751144IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3351144IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-2955144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-185578IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-1893105IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434094118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-18106118IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNPLRVIVKE EELDFAAAAA AAAAAGEGSP SSWAVGVMDL PRPMEGLGEA GPPPFLCKTY  60
EVVDDPGTDT VISWGFAGNS FVVWDANAFA AVLLPRYFKH SNFSSFVRQL NTYGFRKVDP  120
DRWEFANEGF LRGKKEFLKT IKRRRPPPSS PPSSSSSSSS SQQQQHPAAA CLEVGQFGRD  180
GVVNRLQRDK SVLIAEVVKL RQEQQTTRAQ MQAMEERISA AEQKQQQMTV FLARAMKNPG  240
FLQMLVDRQA GQHGGRNRVL EDALSKKRRR PIEYLLTRNG ETCAAVESAA MLAADGVAEP  300
DGDTTPRGDG GGGGDTESFW MQLLSLGLEE KQREDGVAGG GQESNSGGAD VDNDEEDDDD  360
DVDVLVQSIY HLSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-273614410129Heat shock factor protein 1
5d5v_B3e-273614410129Heat shock factor protein 1
5d5v_D3e-273614410129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137143LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3324650.0AY332465.1 Oryza sativa (japonica cultivar-group) putative heat shock protein (HSP2) mRNA, complete cds.
GenBankAY3444860.0AY344486.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF4 mRNA, complete cds.
GenBankAY9981180.0AY998118.1 Oryza sativa heat shock protein 41 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628945.10.0heat stress transcription factor A-2a
SwissprotQ84MN70.0HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLA0A0E0D6Q10.0A0A0E0D6Q1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0D6Q30.0A0A0E0D6Q3_9ORYZ; Uncharacterized protein
STRINGOMERI03G30270.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-89heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]