PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G31070.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 435aa    MW: 47368.7 Da    PI: 4.792
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G31070.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.52.2e-331152052101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+ye+++d+ ++++isw   gnsfvv+d + fa  +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkke l+
  OMERI03G31070.2 115 FLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKEFLK 199
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +ikr++
  OMERI03G31070.2 200 TIKRRR 205
                      ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-36111204IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-33111204IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.5E-57111204IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-29115204IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-18115138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-18153165IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340154178IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-18166178IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MGGSGEGEEL PELSPRAFPN VRRHVTALGS TPSRGKEWRL RFQNCLETSA SQPNPPDPTD  60
MNPLRVIVKE EELDFAAAAA AAAAAGEGSP SSWAVGVMDL PRPMEGLGEA GPPPFLCKTY  120
EVVDDPGTDT VISWGFAGNS FVVWDANAFA AVLLPRYFKH SNFSSFVRQL NTYGFRKVDP  180
DRWEFANEGF LRGKKEFLKT IKRRRPPPSS PPSSSSSSSS SQQQQHPAAA CLEVGQFGRD  240
GVVNRLQRDK SVLIAEVVKL RQEQQTTRAQ MQAMEERISA AEQKQQQMTV FLARAMKNPG  300
FLQMLVDRQA GQHGGRNRVL EDALSKKRRR PIEYLLTRNG ETCAAVESAA MLAADGVAEP  360
DGDTTPRGDG GGGGDTESFW MQLLSLGLEE KQREDGVAGG GQESNSGGAD VDNDEEDDDD  420
DVDVLVQSIY HLSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-269620410129Heat shock factor protein 1
5d5v_B1e-269620410129Heat shock factor protein 1
5d5v_D1e-269620410129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197203LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3324650.0AY332465.1 Oryza sativa (japonica cultivar-group) putative heat shock protein (HSP2) mRNA, complete cds.
GenBankAY3444860.0AY344486.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF4 mRNA, complete cds.
GenBankAY9981180.0AY998118.1 Oryza sativa heat shock protein 41 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628945.10.0heat stress transcription factor A-2a
SwissprotQ84MN70.0HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLA0A0E0D6Q20.0A0A0E0D6Q2_9ORYZ; Uncharacterized protein
STRINGOMERI03G30270.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-87heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]