PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G31070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 399aa MW: 43525.5 Da PI: 4.9374 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106.7 | 1.9e-33 | 55 | 145 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl k+ye+++d+ ++++isw gnsfvv+d + fa +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +gkke l+ OMERI03G31070.1 55 FLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKEFLK 139 9****************************************************************999.........***************** PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +ikr++ OMERI03G31070.1 140 TIKRRR 145 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.3E-36 | 51 | 144 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.5E-57 | 51 | 144 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.77E-33 | 51 | 144 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.6E-18 | 55 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.5E-29 | 55 | 144 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-18 | 93 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 94 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-18 | 106 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MNPLRVIVKE EELDFAAAAA AAAAAGEGSP SSWAVGVMDL PRPMEGLGEA GPPPFLCKTY 60 EVVDDPGTDT VISWGFAGNS FVVWDANAFA AVLLPRYFKH SNFSSFVRQL NTYGFRKVDP 120 DRWEFANEGF LRGKKEFLKT IKRRRPPPSS PPSSSSSSSS SQQQQHPAAA CLEVGQFGRD 180 GVVNRLQRDK SVLIAEVVKL RQEQQTTRAQ MQAMEERISA AEQKQQQMTV FLARAMKNPG 240 FLQMLVDRQA GQHGGRNRVL EDALSKKRRR PIEYLLTRNG ETCAAVESAA MLAADGVAEP 300 DGDTTPRGDG GGGGDTESFW MQLLSLGLEE KQREDGVAGG GQESNSGGAD VDNDEEDDDD 360 DVDVLVQSIY HLSPKGQEDV GGKDIFRHTN RKGHQNIIV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-27 | 36 | 144 | 10 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-27 | 36 | 144 | 10 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-27 | 36 | 144 | 10 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 143 | LKTIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY332465 | 0.0 | AY332465.1 Oryza sativa (japonica cultivar-group) putative heat shock protein (HSP2) mRNA, complete cds. | |||
GenBank | AY344486 | 0.0 | AY344486.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF4 mRNA, complete cds. | |||
GenBank | AY998118 | 0.0 | AY998118.1 Oryza sativa heat shock protein 41 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628945.1 | 0.0 | heat stress transcription factor A-2a | ||||
Swissprot | Q84MN7 | 0.0 | HFA2A_ORYSJ; Heat stress transcription factor A-2a | ||||
TrEMBL | A0A0E0D6Q1 | 0.0 | A0A0E0D6Q1_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G30270.2 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 2e-88 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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