PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G30160.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 615aa    MW: 64118.9 Da    PI: 7.6485
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G30160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30353411259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  OMERI03G30160.1 353 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGNHNHP 411
                      7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-33337413IPR003657WRKY domain
SuperFamilySSF1182901.2E-27345413IPR003657WRKY domain
PROSITE profilePS5081129.987347413IPR003657WRKY domain
SMARTSM007749.7E-37352412IPR003657WRKY domain
PfamPF031061.1E-26354411IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MESYVGVKRK NVVVGGDVGR EMPVAPPSSS SAAAGMGYAG MTAKEAAGGG YQERRVVVGE  60
MDFFKTAEKR GERKEPPPPL PLPPATTTAA ANGLAGASPD DLSLNKDDLT INMGLLVGRR  120
RNSGSEESIV DDGGVSSNDD EHREAKASLA VTKAEIGRLS EENKRLKNML SNVTTKYNSL  180
QMQFVTLMQQ RRSLLDPEKK EQEGSQQQQQ LIPRQFISLG SASLQPDVEA PHSVGGGGGG  240
GGDVCAPSSS NPDAAVPAMM PLPHFDHHHH HHPVHGGRER GSSPAEADHH HRHHQQEQPP  300
PPQQQQQLPP SWLPADKVPR FLPGKGPEPV PEAATMRKAR VSVRARSDAP MISDGCQWRK  360
YGQKMAKGNP CPRAYYRCTM AAGCPVRKQV QRCAEDRTVL ITTYEGNHNH PLPPAAMAMA  420
STTAAAASML LSGSMPSADG SLMAGSNFLA RAVLPCSSTV ATISASAPFP TVTLDLTQTA  480
PPPPPPASST QPPQPRPESA QLQAALAEAA RPVALPQLFG QKLYDQSKLS AVQAVAGTKG  540
SDGGALADTV NAATAAIASD PNFTAVLAAA LTSYIGSSSG SGGGGAGGSS GTVQPLMSGG  600
GDSCSRDDKI GEQNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-21343413877Probable WRKY transcription factor 4
2lex_A1e-21343413877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209860.0AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881266.10.0probable WRKY transcription factor 31
TrEMBLA0A0E0D6F00.0A0A0E0D6F0_9ORYZ; Uncharacterized protein
STRINGOPUNC05G23690.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.16e-74WRKY family protein