PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G06570.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 295aa    MW: 31682.7 Da    PI: 6.3053
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G06570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.3e-21109159256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+ge
  OMERI03G06570.1 109 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRGE 159
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.06E-34108168No hitNo description
SuperFamilySSF541714.12E-23109167IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-33109167IPR001471AP2/ERF domain
PROSITE profilePS5103223.696109166IPR001471AP2/ERF domain
SMARTSM003806.1E-39109172IPR001471AP2/ERF domain
PfamPF008476.6E-15110159IPR001471AP2/ERF domain
PRINTSPR003672.5E-11110121IPR001471AP2/ERF domain
PRINTSPR003672.5E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MATTVDWCGR GSNLPAAMYD MVVDSKELMG ALAPSMVSFS YPCSEQSASS LLAGANYLTP  60
AQVLHVQAQL QRLRRPGAAS GCLAAEAPLP MKRHGAVAVA AAARAPVKLY RGVRQRHWGK  120
WVAEIRLPRN RTRLWLGTFD TAEEAALAYD SAAFRLRGES ARLNFPELRR GGAHLGPPLH  180
AAVDAKLHAI CHGMDLPQPQ PQTQSNATTT TMSTTATNTP SPFFSSESPV VKSEPVCSAS  240
ESSSSADGDV SSTGSSDVVP EMQLLDFSEA PWDESESFLL HKYPSLEIDW DAILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-21105166163ATERF1
3gcc_A9e-21105166163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00585DAPTransfer from AT5G65130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1166040.0AC116604.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0019D17, from chromosome 3, complete sequence.
GenBankAK2876940.0AK287694.1 Oryza sativa Japonica Group cDNA, clone: J065128M14, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629130.10.0ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0E0CWI20.0A0A0E0CWI2_9ORYZ; Uncharacterized protein
STRINGOGLUM03G06750.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-42related to AP2 4