PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G05910.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 294aa    MW: 30498.4 Da    PI: 4.1047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G05910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.6e-12731101555
              AP2  15 WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      W+AeIrdp+e     r++lg+f tae Aa a++aa++ l+g
  OMERI03G05910.1  73 WAAEIRDPVE---GVRVWLGTFATAEAAAHAYDAAARDLRG 110
                      *******866...3************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.67451118IPR001471AP2/ERF domain
SMARTSM003806.9E-1866124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2271120IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-1571119IPR016177DNA-binding domain
PfamPF008471.4E-572110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MCGGAILANI IPATPPRRAT AAHAWPGGEG EKRRKVGGGG GCDDDFEAAF ERFGREDSEM  60
EEEEVVVGKE AAWAAEIRDP VEGVRVWLGT FATAEAAAHA YDAAARDLRG ATAKLNFPSS  120
SSTAAATPRP RKLRPTTATA TPKATTPNVV VVVNLVDEEA EASESSDASG SALPDFSWQG  180
MSASSDDGAE QQAILDAAEL IGTAGGAKKR PRSEPHVTSD DEVLIPASFD SDNNNTAAAG  240
LLPLDDPFLF GDLNGGAFAS LMDGLFAAGE VTNVAGESVG LWSFGDDYLN ASYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0796331e-170AC079633.9 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence.
GenBankAP0149591e-170AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630586.11e-108ethylene-responsive transcription factor ERF073
TrEMBLA0A0E0CW940.0A0A0E0CW94_9ORYZ; Uncharacterized protein
STRINGOMERI03G05860.11e-151(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-07ERF family protein