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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G05890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 331aa MW: 35504.2 Da PI: 5.76 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 109 | 158 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp + +r++lg+f t+eeAa+a++ +++l+g OMERI03G05890.1 109 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTPEEAARAYDVEARRLRG 158 69*******.**********72....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.2E-32 | 108 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-22 | 109 | 167 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-12 | 109 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.446 | 109 | 166 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.53E-28 | 109 | 168 | No hit | No description |
SMART | SM00380 | 5.2E-38 | 109 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-11 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-11 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MCGGAILAEF IPAPSRAAAA TKRVTASHLW PAGSKNAGGG KSKSKRQQRS FADVDDFEAA 60 FEQFDDDSDF DDAEEEDEGH FVFASKSRVA GHDGRAAVRA ASKKKRGRHF RGIRQRPWGK 120 WAAEIRDPHK GTRVWLGTFN TPEEAARAYD VEARRLRGSK AKVNFPATPA AARPRRGNTR 180 ATAAPPPATV PAAAPPRGLK REFSPPETAL PFFTNGFVDL TTAAPPPPAM MMTSSFTDSV 240 ATSESGGSPA KKARSDDVDS SEGSVGGSDT LGFTDELEFD PFMLFQLPYS DGYESIDSLF 300 AAGDANSTNT DMNAGVNLWS FDDFPIDGAL F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-22 | 106 | 166 | 2 | 63 | ATERF1 |
3gcc_A | 7e-22 | 106 | 166 | 2 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU837258 | 0.0 | EU837258.1 Oryza sativa Japonica Group clone KCS050F04 AP2 domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630585.1 | 1e-173 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | A0A0E0CW92 | 0.0 | A0A0E0CW92_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G05840.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7987 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 2e-27 | ERF family protein |