PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G34900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 864aa MW: 95867.3 Da PI: 4.8764 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 39.1 | 1.6e-12 | 646 | 670 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kpr+rWtpeLHerFv+av++LGGse OMERI02G34900.1 646 KPRMRWTPELHERFVDAVNKLGGSE 670 79*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF11107 | 2.3E-46 | 1 | 211 | No hit | No description |
Pfam | PF11107 | 1.2E-18 | 218 | 347 | No hit | No description |
SuperFamily | SSF46689 | 1.08E-6 | 643 | 672 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-17 | 645 | 718 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.6E-6 | 648 | 675 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.08E-6 | 701 | 718 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 4.4E-18 | 756 | 798 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 864 aa Download sequence Send to blast |
MEELLGLVRG FVDVLVLAGG RTSSGAAATW RSGDVKKALQ WALFFEEVFK NLRDDGQYDE 60 SARELDAALV QLTSSPNFPK GIEDIRSKTL ATARELVLKH FLKTTNAENL GAVLQAVVEM 120 DMDGISASGE RSVCQEYVQS ILDMNLPSLM RTKNACDVGY STSSDEFCEE SLFMGNSQIL 180 LKELQKKLDS GSCISLAERE LNTLLKSMKK DSFDSAGSTL CTSATAQKTQ IVDKFILWKQ 240 WKAKCLLYLL DERTIRIMSG TNLIFNAPKE QWMGLFEPLK VSADSSQSGI IEVMELCLLG 300 LVARQWNSLI ESFMSHTFSS FPISKQYADL HQLLQGTTQD ECQDKLLGFK EMDICEYARQ 360 SLESEPYILW LLPPVLTAAA MPPRSSLFKI YLVEIDKQLG EAGSKDRPTS TMNQLRNGKV 420 PQYLSPAITV VPALSEVAFP SFSEHRPSYI EREQCGSSIN SFDPSTPMCM LASNFTSDLY 480 INNSESPNGK LSSESYAIDT SGCDSSLPQQ SLYKGNPNSL RMVYPKVSEQ NSWSQEPLPG 540 PFVCPTSVDF FDQQDMAIFD QQIQDNIAAS PRTNLAKQNE WFSSGTSLQY LESSVSAGSV 600 LKAADATSTT PSNYSHCHAQ RNTSNPPNFN ELCSGNIASS NIAPTKPRMR WTPELHERFV 660 DAVNKLGGSE SWSLILCSSY HIFILNFYGT VLFSQEETKA TPKAVQKIMK VDSLTIYHKY 720 RTVHHRPQLS DGESAKSGQM DEVSSQPLKG METTCEGLRV QIGLQKQLHE QLEIQRKLQL 780 QVEEHSKYLA MIIEKQSESL RQLGALPRSL DAPTQVLDNR ETCEGQTGDA DSAEQKPEKG 840 MHNLEISEET PYAGSLAAGS DNQG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066382 | 0.0 | AK066382.1 Oryza sativa Japonica Group cDNA clone:J013064K05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0CT07 | 0.0 | A0A0E0CT07_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G34190.3 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5494 | 25 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 5e-35 | phosphate starvation response 1 |