PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G25780.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 341aa    MW: 35916.2 Da    PI: 5.9915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G25780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-19155206256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+++AeIrdp+++g   r++lg+++ a eAa+a+++a+ +++g+
  OMERI02G25780.1 155 KYRGVRQRP-WGKFAAEIRDPKKRG--SRVWLGTYDKAIEAARAYDRAAFRMRGA 206
                      8********.***********8876..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.5E-32154214IPR001471AP2/ERF domain
PfamPF008472.2E-13155205IPR001471AP2/ERF domain
CDDcd000181.66E-30155214No hitNo description
SuperFamilySSF541711.05E-21155214IPR016177DNA-binding domain
PROSITE profilePS5103223.617155213IPR001471AP2/ERF domain
SMARTSM003809.1E-37155219IPR001471AP2/ERF domain
PRINTSPR003672.1E-13156167IPR001471AP2/ERF domain
PRINTSPR003672.1E-13195215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDFSGDIDDL ISLQLLHDQL LGVEADACLP VAVHGGDAAA YAEHQQGFHP AAFLPQQPTT  60
ILPPAGYVDM ANDQYMGAHA AAGEAEAVYR AAAAEPVMIR FGGEVSPVSD PRRPPLTISL  120
PPTSHAWAAA EAVHPAALLQ AQAAAAAADP NDFRKYRGVR QRPWGKFAAE IRDPKKRGSR  180
VWLGTYDKAI EAARAYDRAA FRMRGAKAIL NFPNEVGSRG ANFLAPPPPP TSTHGKRKRH  240
ETAAADPDVE VIGESSKSVK TETYASPASS SLASTTTSTV TSSSTLPSPS SEAAACGGGG  300
GELFVPPMPS SWSWDQLEGF FGILSPLSPH PQMGFPEVAV N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-27156218668ATERF1
3gcc_A9e-27156218668ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046760.0AP004676.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1003_B06.
GenBankAP0050060.0AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624058.11e-177ethylene-responsive transcription factor 5
TrEMBLA0A0E0CP940.0A0A0E0CP94_9ORYZ; Uncharacterized protein
STRINGOMERI02G24920.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-23ethylene responsive element binding factor 5