PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G12140.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 366aa    MW: 38711 Da    PI: 4.8608
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G12140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.63.8e-31178236259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++ tY+geHnh+
  OMERI02G12140.1 178 ADVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRSDPNTFILTYTGEHNHS 236
                      69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-32163238IPR003657WRKY domain
PROSITE profilePS5081133.832172238IPR003657WRKY domain
SuperFamilySSF1182901.96E-26175238IPR003657WRKY domain
SMARTSM007742.1E-37177237IPR003657WRKY domain
PfamPF031064.6E-26179235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEEELCGNNW DLDAVVRLGC CRRRISPAAA SAVDPFASFL QQGVAMEVAA EKEVGVEAAW  60
SFPELTVRDG GGGHGLGRDA DELLKAFCAA FPSSSSSKSS LPTPPPPPPP QTQPQPQPEQ  120
QQKPVTTVQE NLPAPTTASP ARASAARQVP AGGVPRSKRR KNQQKKVVRH VPADGVSADV  180
WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP ARKQVERSRS DPNTFILTYT GEHNHSAPTH  240
RNSLAGTTRN KLPSSAASAS AAAQPQPPPP SVVVVGAGGG GGAEAAGLSP TTPLRTPSME  300
EEEEEEEEEE LLVEDMEMAG EDELLFLNGG DNNAALDGTP MSSLFDIADE PFLPSPWTEP  360
TATAGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-19161239280Disease resistance protein RRS1
5w3x_D2e-19161239280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667750.0AK066775.1 Oryza sativa Japonica Group cDNA clone:J013074N21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623400.11e-170probable WRKY transcription factor 27
TrEMBLA0A0E0CIS10.0A0A0E0CIS1_9ORYZ; Uncharacterized protein
STRINGOMERI02G11960.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-44WRKY family protein