PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G10300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 699aa MW: 73290.1 Da PI: 8.8965 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.4 | 1.9e-11 | 445 | 488 | 5 | 53 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 h + ErrRR+r+N++fe Lr llP+ K +Ka++L k+ eY++ OMERI02G10300.1 445 HMISERRRRERLNESFEHLRGLLPPG-----SKKDKATVLAKTLEYMNL 488 8899********************95.....599************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-16 | 439 | 510 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.212 | 440 | 489 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.2E-15 | 444 | 509 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-9 | 445 | 488 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.1E-11 | 446 | 495 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.64E-5 | 455 | 489 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
MDTIFVLGQE SRQRILHRAA ARLPGCAYVC AWAPLPLPAA GLHHHQPPPP PPSSGGAAAR 60 LLYCVDGWLS GGEDGGGVRA LFDAYRGSVC GAVTGCVPGW AYVGGGGAFM ELSELELVAS 120 ASLPVQQSFY QEAGIKVRNL FHNICFVRVV LAEKSRRMKL TWAILGGVQM AAFMGCESGE 180 IEVGFSTAPA ENYGGGAGGS LQASVEQVFS EDFFQQSLLE ELLQLPPTRP SSSSSSLVGS 240 PADGAASTSL LRTMTPMMAS SSATPSPREL AAQVATTPSS SRLHPRPPAP HHVHVSPFSR 300 HGGGVLHFPS AEADDAAMAQ AMLDVISSPS TSSSAAALHA PWSSVKRRAQ IIRSPPRGTP 360 ATTTAFRAYN AALAPRAAAS RRPPGAPGQR MIKMGFSILR RMHMVRCSQE RAAAASAAAA 420 QRSGGDDDED ATAAPPPPTS SQLHHMISER RRRERLNESF EHLRGLLPPG SKKDKATVLA 480 KTLEYMNLLI AQISELEAKN RALQTQIHQR ANGSSSSRSS MIRTVNEVHH HHHHQWLAVA 540 GAAGSPERVQ VHVIGGGDHD GGTSTSSSSA PEVTVRVAVR ARERGGADVS ELVLRVLALL 600 KAMGGFTVVA VDARQPGGGG NGGAAQASLT LRATVKVNQI SLAPLLIALP YSDGAWGPPE 660 KTQLENLTAP AGEFDEASLK EAVAKAVESL VAPPPPPPP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 448 | 453 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623939.1 | 0.0 | putative transcription factor bHLH041 | ||||
TrEMBL | A0A0E0CI26 | 0.0 | A0A0E0CI26_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G10210.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3977 | 33 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 3e-12 | bHLH family protein |