PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G22970.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 294aa    MW: 31124.3 Da    PI: 4.2452
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G22970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-2096146155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ +++a+ +l+g
  OMERI01G22970.1  96 TKFRGVRRRP-WGKFAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDNAAIQLRG 146
                      69********.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1296146IPR001471AP2/ERF domain
CDDcd000182.30E-3096156No hitNo description
Gene3DG3DSA:3.30.730.108.1E-3097155IPR001471AP2/ERF domain
PROSITE profilePS5103223.02497154IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2297156IPR016177DNA-binding domain
SMARTSM003803.4E-3797160IPR001471AP2/ERF domain
PRINTSPR003672.3E-1098109IPR001471AP2/ERF domain
PRINTSPR003672.3E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSRSRTVRIF WDDPDLTDSS GEDEGCGGRR VGSMVRELPP AQLPVAQAGF APAAALPEQC  60
SGGDGDMGRR IVGGGCTVGV GRRRLTKGGG PGAPSTKFRG VRRRPWGKFA AEIRDPWRGV  120
RVWLGTFDTA EEAARVYDNA AIQLRGPSAT TNFSTSTNSA GAQDPVAVGY ESGAESSPAV  180
SSPTSVLRKV PSLCSLAEDK DDYEAGPCEP ATAAGSSLTV LEEEELGEFV PFEDAPVYGG  240
SSFWDFEPES GFLYAEPSSP ETPWDAGATS SGEAQDYFQD LRDLFPLNPL PAIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-2388158576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3393770.0AY339377.1 Oryza sativa (japonica cultivar-group) Ap24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635207.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A0E0C5J40.0A0A0E0C5J4_9ORYZ; Uncharacterized protein
STRINGOMERI01G22130.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-25cytokinin response factor 4