PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G21380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 351aa MW: 36949.7 Da PI: 6.4065 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85 | 6.9e-27 | 181 | 239 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+s gC+++k vers p ++++tY eH h+ OMERI01G21380.1 181 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKMVERSPAKPGMLVVTYMAEHCHP 239 799***********************9988***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 30.377 | 175 | 241 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.8E-27 | 176 | 241 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.26E-24 | 178 | 241 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-32 | 180 | 240 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-22 | 182 | 239 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MRRPLLLRAV VVVAMEHFND WDLQAVVRSC SFPQSEPPRV GVGVGVPAAP GAGGAPVVVA 60 PPARAPDGPD QMARASASAL YDLEYLDLDH KPFLLPGSSS SSSSSRAVAR ARGEDDGKGS 120 HEVMISFPAA AAASTSGAQP RSPSGRKPGI RTPRPKRRSS KKSQLKKVVY EVPVADGGVS 180 SDLWAWRKYG QKPIKGSPYP RGYYKCSSMK GCMARKMVER SPAKPGMLVV TYMAEHCHPV 240 PTQLNALAGT TRHKSAPTGD DDKPTSLGPA AGTAAAGEGV VKCEGVDGNE LSAMASDGGA 300 EDTAAADDDG ELWPEGMGLE LDEFLGPMDD DVFEFDHVLE DDGVLGRRLS L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 6e-21 | 162 | 242 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 6e-21 | 162 | 242 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 162 | RRSSKKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111416 | 0.0 | AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence. | |||
GenBank | AY870601 | 0.0 | AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640600.1 | 0.0 | WRKY transcription factor 22 | ||||
TrEMBL | A0A0E0C4V8 | 0.0 | A0A0E0C4V8_9ORYZ; Uncharacterized protein | ||||
STRING | ONIVA01G26290.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4279 | 30 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 2e-37 | WRKY family protein |