PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G06300.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 150aa    MW: 16465.4 Da    PI: 9.5304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G06300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-094898455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STC.HHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsK.aeiLekAveYIksLq 55
                      h + Er+RR++iN +f  L++     +   p+ Kl+K ++iL +A eY+k L+
  OMERI01G06300.1 48 QHTMSERKRREKINGSFVALQSRPYVlP---PGSKLDKtSSILIRAREYVKFLE 98
                     599******************9855534...8999666489**********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.16E-1142102No hitNo description
PROSITE profilePS5088810.2714497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1444118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-74898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-1448118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-650103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MELPAIGGAL SHHRIGADHD AHGNNVQAYA SANTSRQRPP PSGNNQLQHT MSERKRREKI  60
NGSFVALQSR PYVLPPGSKL DKTSSILIRA REYVKFLESK LSELDEKNRE LEARLASSPA  120
VVAKNDEEEA AAPPEAGGEV KRERLFTTGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257ERKRRE
25358RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034174e-96AP003417.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0498B01.
GenBankAP0149574e-96AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880866.12e-43putative transcription factor bHLH041
TrEMBLA0A0E0BYK81e-105A0A0E0BYK8_9ORYZ; Uncharacterized protein
STRINGORUFI01G06700.11e-45(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-16bHLH family protein