PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G23100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 996aa MW: 97854.4 Da PI: 5.9102 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.8 | 1.8e-10 | 121 | 172 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr + r+vAeI+ p+ r +lg+f+tae+ a a++aa++ l+ge OGLUM06G23100.1 121 TKYRGVRVRF-GTRYVAEIHNPT----GaGRLWLGTFDTAEQGAWAYDAAARVLRGE 172 69********.8*********95....258************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-4 | 121 | 172 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.12E-18 | 121 | 178 | No hit | No description |
SMART | SM00380 | 6.6E-18 | 122 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-14 | 122 | 179 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.701 | 122 | 179 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-21 | 122 | 179 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 996 aa Download sequence Send to blast |
MDPEERVAEA MKGLLVEYSQ QSARLAVQVR GNEYRRAAAA GGGGGFLLSP GERERLRAGS 60 GLELVIVPVM EGDQVVSSSA SAEVLVSPLV EGEVRVVPAV ERRRWRRQAA AEEWEEIDPE 120 TKYRGVRVRF GTRYVAEIHN PTGAGRLWLG TFDTAEQGAW AYDAAARVLR GEAAATNFGD 180 PAQAPSPLSA EMRSMLAFFD RARARRERVV EERGAAAAEA EASEAPAPAP LLLLPAPPPS 240 SDVSPVTVQV AAPPSSSDAA PVPATLLSDA SPVIVQVPVP PSSDAAPVPA PTLSDASPVP 300 VQVPAPQSSD VALVPVPVQV PAPTSSGSDE AAFVGGRGRG TGAGVGGGRG LGRGGGGGRG 360 RGGKRAPTTA VAVVAPPPQV PTPAAVAAAP TLAPASAAAH APALSVEPDA LVSPASSAIA 420 PAYAVPAPAP APAALEALAP PPPAAPASLS ASGGERGCVA IANAAVAGRG RGRGSGAKRA 480 PTAVNVGAPP PQARTPAAAP AKAFVSAPAP APSAVVSPVL AASASAAAAF APAPAPAAAE 540 VIPPPPPLPA AASTAAAPAA ERKRKLLTAS SLSSSGGERG RGRARGRGRV ADAAIAGGSR 600 GRGRGCGLTP AVVTVGAPPP PSAALAPAPA SAPSLEPNDI IAPVVSSTLA PGASDAAAAA 660 PVAAPEAILI PMPPPVAAAA AAAPVPKKRK LLTASTLSGS GGPGRGRGRV AEATFAGRGR 720 GVWSGRGRGR GRIPTEVIVG TPSPSAPTPA PASATAPLIQ SNVVISPVPP TLTASGVAAW 780 PTVPAIPELT TAAAAPLPEK PVLTAHDVVM ATLFPNGVFS YTAGSSHAPP PPPPPPPVAS 840 GSFFQEVIPP GGVPTNYAIH EAPDFDPNIF FANVPDGEQD EPVLLSSTST LLDVDNSLTL 900 VADDAASSAQ AAVDVASSSA QAAIDVPSSS VLAVVDVPSS SAQAAIDVPA SSAQPATDVA 960 SSSTQGAAGN ERSISLEPNA VISPVSSTLT ASAVAA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 578 | 587 | RGRGRARGRG |
2 | 578 | 588 | RGRGRARGRGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005386 | 0.0 | AP005386.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0AC75 | 0.0 | A0A0E0AC75_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G23100.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13787 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12980.1 | 5e-12 | ERF family protein |