PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G22000.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 448aa MW: 48659.3 Da PI: 7.3574

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G22000.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	279	298	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ OGLUM06G22000.1 279 FSCPVCYKTFNRYNNMQMHM 298 89*****************9 PP
2	zf-C2H2	13.9	0.00016	363	385	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ OGLUM06G22000.1 363 FMCRKCGKAFAVRGDWRTHEKNC 385 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.71E-5	275	301	No hit	No description
SMART	SM00355	0.45	279	301	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.743	279	306	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.2E-6	279	298	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	281	301	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.85E-6	347	383	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	359	383	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	363	383	IPR007087	Zinc finger, C2H2
SMART	SM00355	49	363	383	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MHTHTQDTTT LPLHLSLFIT VVCLLLHPLC YLLFSFSSYL ELAPYYQSSS MGDPYTNFLR 60 GYHHHHRSHH PLHFPPPPPP PPPPYAASFS GLYSSYLHPP PPPSSPPIRE ALPLLSLTPS 120 TTHDDDHHHR RHDQDHHHHH KQGQEKNSHG GGGAASCSNN DDKRESPSAA AAAADDQAAE 180 VTVALHIGLP SPSPSDAAAA AGNQAAAAAA AEASAAGGGS SRMQVEEEGG EEEDEDEAAA 240 AAATATLPLG CASIGIGKLT KGQYWIPTPS QILIGPTQFS CPVCYKTFNR YNNMQMHMWG 300 HGSQYRKGPE SLRGTQPTAM LRLPCYCCAA GCRNNIDHPR ARPLKDFRTL QTHYKRKHGI 360 KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CACGSDFKHK RSLKDHIRAF GRGHAACGID 420 SFDDLDADDD PSSDLDHASA SASASRVG

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MHTHTQDTTT LPLHLSLFIT VVCLLLHPLC YLLFSFSSYL ELAPYYQSSS MGDPYTNFLR  60
GYHHHHRSHH PLHFPPPPPP PPPPYAASFS GLYSSYLHPP PPPSSPPIRE ALPLLSLTPS  120
TTHDDDHHHR RHDQDHHHHH KQGQEKNSHG GGGAASCSNN DDKRESPSAA AAAADDQAAE  180
VTVALHIGLP SPSPSDAAAA AGNQAAAAAA AEASAAGGGS SRMQVEEEGG EEEDEDEAAA  240
AAATATLPLG CASIGIGKLT KGQYWIPTPS QILIGPTQFS CPVCYKTFNR YNNMQMHMWG  300
HGSQYRKGPE SLRGTQPTAM LRLPCYCCAA GCRNNIDHPR ARPLKDFRTL QTHYKRKHGI  360
KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CACGSDFKHK RSLKDHIRAF GRGHAACGID  420
SFDDLDADDD PSSDLDHASA SASASRVG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071104	0.0	AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642156.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-127	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0E0ABU2	0.0	A0A0E0ABU2_9ORYZ; Uncharacterized protein
STRING	OGLUM06G22000.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-116	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]