PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G29010.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 384aa    MW: 40836.5 Da    PI: 9.2261
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G29010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.75.6e-1764150271
         trihelix   2 WtkqevlaLiearremeerlrr.gk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                      Wt +e+l Li+a+r +++r    g                 +++++W++v +++++ g+ rs++qC++kw+nl ++ykk+++ e++ 
  OGLUM04G29010.1  64 WTLHETLILITAKRLDDDRRAGvGGgaaaggggagspptprSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKVRDYESRV 150
                      *************9666655531224455667777777777*****************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.56256137IPR017877Myb-like domain
PfamPF138378.5E-1163148No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSGSSAADPS PSASTAGAAA SPLALLRAHG HGHLTPPSAA TGPAPPPPSP ASGSAPRDYR  60
KGNWTLHETL ILITAKRLDD DRRAGVGGGA AAGGGGAGSP PTPRSAEQRW KWVENYCWKN  120
GCLRSQNQCN DKWDNLLRDY KKVRDYESRV AAAAVTGGAA TANSAPLPSY WTMERHERKD  180
CNLPTNLAPE VYDALSEVLS RRAARRGGAT IAPTPPPPPL ALPPPPSPPK PLVAQQQHHH  240
HGHHHHPPPP QPPPSSLQLP PAVVAPPPAS VSAEEEMSGA SESGEEEEGS GGEPEAKRRR  300
LSRLGSSVVR SATVVARTLV ACEEKRERRH RELLQLEERR LRLEEERTEV RRQGFAGLIA  360
AVNSLSSAIH ALVSDHRSGD SSGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296300KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2032430.0EF203243.1 Oryza rufipogon shattering 1 (SHA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448740.21e-111trihelix transcription factor ASR3
TrEMBLA0A0D9ZS880.0A0A0D9ZS88_9ORYZ; Uncharacterized protein
STRINGOGLUM04G29010.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.14e-41Trihelix family protein