PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G20610.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 328aa    MW: 34838.6 Da    PI: 5.5848
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G20610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-20138189256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  OGLUM04G20610.1 138 KYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 189
                      8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-32137197IPR001471AP2/ERF domain
PROSITE profilePS5103224.144138196IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22138197IPR016177DNA-binding domain
PfamPF008471.6E-14138188IPR001471AP2/ERF domain
CDDcd000182.35E-29138197No hitNo description
SMARTSM003805.5E-37138202IPR001471AP2/ERF domain
PRINTSPR003672.0E-13139150IPR001471AP2/ERF domain
PRINTSPR003672.0E-13178198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDFHHGDADD FALEFIREHL LGVDGATATA TEPADLEVVE PAAAYPPMSW QEQRQQEQHG  60
CHVELTHEHL ESAPAAEAAA AFRTAPAQPA AEVMIKFGGE PSPVRPSSSL TISLPPSSFG  120
SWASAAAPAA AAVEDFRKYR GVRQRPWGKF AAEIRDPKRR GSRVWLGTYD TPVEAARAYD  180
RAAFRMRGAK AILNFPNEVG TRGAELWAPP PPPPAHSAAA STTNKRKRQP SEDPDDGVEV  240
IGVVSKAVKT EAPTSNSSSL SSSLTSRDTT PATSSAGAEH AGAAAESSPA TPSSWSWEQY  300
WEALLGGLPP LSPLSPHPAL GFPQLTVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26139201668ATERF1
3gcc_A2e-26139201668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1091410.0AK109141.1 Oryza sativa Japonica Group cDNA clone:002-155-E09, full insert sequence.
GenBankAL6070060.0AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence.
GenBankAL7316130.0AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY3393790.0AY339379.1 Oryza sativa (japonica cultivar-group) Ap26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635116.10.0ethylene-responsive transcription factor ERF105
TrEMBLA0A0D9ZNU80.0A0A0D9ZNU8_9ORYZ; Uncharacterized protein
STRINGOGLUM04G20610.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-32ethylene responsive element binding factor 5