PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G06750.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 296aa    MW: 31721.8 Da    PI: 6.5073
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G06750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.4e-21110160256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+ge
  OGLUM03G06750.1 110 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRGE 160
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.57E-35109169No hitNo description
SMARTSM003806.1E-39110173IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-23110168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-33110168IPR001471AP2/ERF domain
PROSITE profilePS5103223.696110167IPR001471AP2/ERF domain
PfamPF008476.6E-15111160IPR001471AP2/ERF domain
PRINTSPR003672.5E-11111122IPR001471AP2/ERF domain
PRINTSPR003672.5E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MATTVDWCGR GSNLPAAMYD MVVDSKELMG ALAPSMVSFS YPCSEQSASS LLAGANYLTP  60
AQVLHVQAQL QRLRRPGAAS GCLAAAPPLP MKRHGAVAVA AAAARAPVKL YRGVRQRHWG  120
KWVAEIRLPR NRTRLWLGTF DTAEEAALAY DSAAFRLRGE SARLNFPELR RGGAHLGPPL  180
HAAVDAKLHA ICHGMDLPQP QPQTQSNATT TTMSTTATNT PSPFFSSESP VVKSEPVCSA  240
SESSSSADGD VSSTGSSDVV PEMQLLDFSE APWDESESFL LHKYPSLEID WDAILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-21106167163ATERF1
3gcc_A9e-21106167163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00585DAPTransfer from AT5G65130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1166040.0AC116604.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0019D17, from chromosome 3, complete sequence.
GenBankAK2876940.0AK287694.1 Oryza sativa Japonica Group cDNA, clone: J065128M14, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629130.10.0ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0D9Z3A10.0A0A0D9Z3A1_9ORYZ; Uncharacterized protein
STRINGOGLUM03G06750.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-43related to AP2 4