PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G04830.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 467aa    MW: 53393.7 Da    PI: 7.9036
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G04830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.47.1e-5061361128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                      lppGfrFhP+d+elvv+yL  k+++       +++  ++ +vd++k+ePwdLp+ +  + kewyf+  +d+kya+g+r+nrat+sgyWkatgkd
  OGLUM02G04830.1   6 LPPGFRFHPRDDELVVDYLSGKLRSGGaagagCPT-PTLIDVDLNKCEPWDLPEIACIGGKEWYFYNLKDRKYARGQRTNRATESGYWKATGKD 98 
                      79*********************999966655444.35889************7666789********************************** PP

              NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +e+++ kg+lvg++ktLvfy+grapkge+tdWvmhe+r 
  OGLUM02G04830.1  99 REITR-KGSLVGMRKTLVFYRGRAPKGERTDWVMHEFRQ 136
                      ****9.999****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-593159IPR003441NAC domain
PROSITE profilePS5100554.9216159IPR003441NAC domain
PfamPF023654.4E-247135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MVEARLPPGF RFHPRDDELV VDYLSGKLRS GGAAGAGCPT PTLIDVDLNK CEPWDLPEIA  60
CIGGKEWYFY NLKDRKYARG QRTNRATESG YWKATGKDRE ITRKGSLVGM RKTLVFYRGR  120
APKGERTDWV MHEFRQELDH ANHHHHLKEG WVLCRVFYKS RTEAVAAPTM ESTLPPRYIN  180
GGTSRSPLPP LVDSSISFNH GGYEEVLPCF SSSHHQQPSP ASMNASAAAD DDQDYHHLSE  240
GQRHYSDKKM MRDVQNDQVT TRFDGHLAVK REMSLKKKDL SEDEQAAPNA DAGGFSILLK  300
YSVSKMTSLM KPIQRNISTL QEFLNQKKEV ILEKVEIFTK LLLPSRLGSA VFQLCLAHLI  360
KNHKVGISWD GIWELSDWEV ADNEVVLKMV GQCSAPADSK SKDLKRLFDL LRPYYDQEGK  420
DPHLFFEHLK FDFTDVLKTI VTDAKWEWFW KYLLNHVFVM PPTGNTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-47216011169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048630.0AP004863.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0023I17.
GenBankAP0058040.0AP005804.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0085K21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624259.10.0NAC domain-containing protein 21/22 isoform X2
TrEMBLA0A0D9YMR10.0A0A0D9YMR1_9ORYZ; Uncharacterized protein
STRINGOGLUM02G04830.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1753499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.25e-77NAC domain containing protein 1