PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G23720.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 381aa    MW: 41680.4 Da    PI: 5.7932
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G23720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.12.5e-32731672103
                      HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                      F+ k+ye++ d++++ ++sw    +g sfvv+d++ +a  vLp++Fkh nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+l
  OGLUM01G23720.1  73 FVAKTYEMVADAATDAVVSWGpgGSGASFVVWDPHALAAAVLPRFFKHANFSSFVRQLNTYGFRKVTPDR---------WEFANEAFLAGQKHL 157
                      9********************655679*****************************************99.........*************** PP

                      XXXXXXXXXX CS
     HSF_DNA-bind  94 lekikrkkse 103
                      l++ikr++ +
  OGLUM01G23720.1 158 LKNIKRRRVS 167
                      ******9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3469164IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.8E-5469164IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.58E-3169164IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-177396IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.7E-2973164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-17113125IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340114138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-17126138IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MASSSSSSLC RLLIPRPTTR RFSAGGGEGG MAAAAVKREV KPEAGEGWGG GDLGVVVPPR  60
PMEGLGEAGP APFVAKTYEM VADAATDAVV SWGPGGSGAS FVVWDPHALA AAVLPRFFKH  120
ANFSSFVRQL NTYGFRKVTP DRWEFANEAF LAGQKHLLKN IKRRRVSKPL MDSQLRNKTS  180
VVFGQPEAPG EVVSLKRDRA ALRAEVIMLK QQYNACKSQL IAMEEMVRNI ERRQQQTISL  240
FAKVLTNPVF VQQVLLNYVN KNGLRGAAKR QRLMENEEQH ADSPLNKGME AASVMEADVS  300
PGSTGCGTVG KVETTPMCNS QNIENMCDDV WEELDALPET GMEQEDKAGI DSFDVEEFVG  360
RPCGWVDDCP YLVEPMQFVE H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-234916410129Heat shock factor protein 1
5d5v_B3e-234916410129Heat shock factor protein 1
5d5v_D3e-234916410129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163LKNIKRR
2161165KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642710.0AK064271.1 Oryza sativa Japonica Group cDNA clone:002-105-E08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631502.10.0heat stress transcription factor A-6a
SwissprotQ657C00.0HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLA0A0D9YAQ50.0A0A0D9YAQ5_9ORYZ; Uncharacterized protein
STRINGOGLUM01G23720.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-75heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]