PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G04870.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 317aa    MW: 35552.1 Da    PI: 5.1888
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G04870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.6e-1670119154
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                      s+y+GVr++  +g+W+AeIrd +     r  r ++g+f ++eeAa+a+ a  ++++
  OBART09G04870.1  70 SKYRGVRRRA-WGKWAAEIRDpV-----RkSRKWIGTFNSEEEAAAAYLAQSNQFH 119
                      89*****777.**********44.....55******************88766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-1470103No hitNo description
PfamPF008471.1E-970113IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1670123IPR016177DNA-binding domain
SMARTSM003803.3E-1471125IPR001471AP2/ERF domain
PROSITE profilePS5103218.6571128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-2071113IPR001471AP2/ERF domain
PRINTSPR003671.5E-87283IPR001471AP2/ERF domain
PRINTSPR003671.5E-894110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVPSSRKVRV FCSDPDATDS SDEDDQNKKE RRFSREILIP MESSKASKPV KTLVQCGTKT  60
VKDSEKEPTS KYRGVRRRAW GKWAAEIRDP VRKSRKWIGT FNSEEEAAAA YLAQSNQFHE  120
ELMALKIQSS VSEQEDLSSS VTISCVSSSQ SCDQKIQAKP QEHKRVSVVV NRETVEQKFK  180
AQPQAQKIKA QPEVQKRVSV KISHETEDEH LLNLPSMPKG KEISMGAVLG RIDEIPVSNC  240
VGHIDEFPPD DFTRLADAFP VSDFIGMADV PLGDDYIGLA DISHLPLPIT DLKFDLDAEL  300
NWDGFNFASL EQELNCL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8311650.0CT831165.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI221K24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651273.10.0ethylene-responsive transcription factor ERF117
RefseqXP_015651274.10.0ethylene-responsive transcription factor ERF117
RefseqXP_015651275.10.0ethylene-responsive transcription factor ERF117
RefseqXP_015651276.10.0ethylene-responsive transcription factor ERF117
TrEMBLA0A0D3H5100.0A0A0D3H510_9ORYZ; Uncharacterized protein
TrEMBLI1QMT10.0I1QMT1_ORYGL; Uncharacterized protein
STRINGORGLA09G0036000.10.0(Oryza glaberrima)
STRINGOBART09G04870.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.13e-17ERF family protein