PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G01020.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 416aa    MW: 44911.8 Da    PI: 9.8573
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G01020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-05309331123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C +Cg++Fs+   L  H+++H
  OBART09G01020.1 309 YECRKCGTMFSSGQALGGHMKSH 331
                      99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.87E-6306335No hitNo description
Gene3DG3DSA:3.30.160.603.3E-4308332IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.9E-8309331IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.635309336IPR007087Zinc finger, C2H2
PROSITE patternPS000280311331IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAPSRISSSE SERPVGSYRF HIPRQPPRIQ AEGGKRHMII GDRRHGGTAL WRRGSMLPPS  60
LPRWGVQDGH GHVDGSSRQH PSELGSSSAL SVLIGGWIWR SAAAQAHGEV IDGGRCEDEA  120
GDHMQPPPAS SASMAMLSEE RISASGIVVR ERQLHGYGER PFLPCLATMA AKGTAREIST  180
KKIAKKDHGE VGDLTMAMLM PSWTSTGNHS SRNPTRCLEQ LPEPSKRAHS EAYGNMQLAT  240
GDLIVGLHKQ ATITVPPPNI SEIGGHLTAH KNNEMTVGKR VQHIIDVSVA KEATRSLVSS  300
ARQSRRGPYE CRKCGTMFSS GQALGGHMKS HNSDERWGDK RVPSAFVGSF LSLITPIDVS  360
NVSVPSSRNP HTSSIPNKEE GRVLVMGAAP LNGVPKGSFR LFGENIAEAP KEEPME
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2421860.0AK242186.1 Oryza sativa Japonica Group cDNA, clone: J075161K18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611340.10.0uncharacterized protein LOC4346425
TrEMBLA0A0D3H3Q30.0A0A0D3H3Q3_9ORYZ; Uncharacterized protein
STRINGOBART09G01020.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162161213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-07C2H2 family protein