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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G15490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARR-B | ||||||||
Protein Properties | Length: 620aa MW: 66278.8 Da PI: 4.953 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 47.7 | 3.5e-15 | 265 | 318 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgL..tlehvkSHLQkYRl 55 +r Wt+ H++Fv+a eqL +++ Pk+i++lm+++g+ t ++v SHLQkYR+ OBART05G15490.1 265 TRFTWTTVSHTSFVRAYEQL--KDQEGPKKIKQLMELDGIfvTKTQVSSHLQKYRS 318 799*****************..999**************655999**********6 PP | |||||||
2 | Response_reg | 59.2 | 2.3e-20 | 25 | 130 | 1 | 107 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 vl+vdD+ + +e l+ +l +gy v+ +++eeal+ ++++ +++i++D+ m+gmdG++ll +i+ ++p+i+++ ++ ++ + + OBART05G15490.1 25 VLVVDDDAAYLEELKLMLLLAGY-AVTGKTTAEEALKEVDQNPedyFHIIMTDVHMSGMDGFDLLHRING---RVPVIMFSEGEDVVMVMRTVM 114 89*********************.***************7777777**********************98...67******************* PP TTESEEEESS--HHHH CS Response_reg 92 aGakdflsKpfdpeel 107 Ga d+ +Kp+ e++ OBART05G15490.1 115 NGACDYMVKPMTSEAI 130 **********998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.39E-26 | 21 | 142 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 7.9E-28 | 22 | 143 | No hit | No description |
SMART | SM00448 | 1.1E-21 | 23 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 34.82 | 24 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.0E-17 | 25 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.65E-18 | 26 | 138 | No hit | No description |
SuperFamily | SSF46689 | 3.58E-9 | 263 | 322 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-14 | 264 | 321 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-11 | 265 | 318 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 620 aa Download sequence Send to blast |
MAENNGAVPP GCKLPAGGFF GRLHVLVVDD DAAYLEELKL MLLLAGYAVT GKTTAEEALK 60 EVDQNPEDYF HIIMTDVHMS GMDGFDLLHR INGRVPVIMF SEGEDVVMVM RTVMNGACDY 120 MVKPMTSEAI KFIWKHVLRW RLSALPANAS SSLQPSDHLA AALAAVAPPP PPAVQLPAAP 180 AQAGNRDGEA HEEAELSTQP PALVPSGVQE AAAAVWSSRG DGQEAPPAAV AAAAKAPSKK 240 RGASEVSDRG SNNLEATTGR KKVRTRFTWT TVSHTSFVRA YEQLKDQEGP KKIKQLMELD 300 GIFVTKTQVS SHLQKYRSWL ENERKKEEAT SSSPCNPLSY TNCLDRGYST WKQSSVITEG 360 QQSSSFSGRP IHSMATSNGC LTTTNTQAGN YVGVGAKEIE NFIFSHQRSL GTAIGQESTI 420 EQASLHSEIT SVSRDAHENG NSQARGSAMS NGTSGTRGVL VTNENLLHVV SASLPSNMGQ 480 PTQPSQSFCT NELAANYSII SDQNPGTSHP TSSSAINNQN SKTQEMSVSQ TVELGCGNDV 540 MLDWPELVGL EDQLDNDVLM NSFFDGDLLQ QGVVTAIDGT QEMLAFDSTG DLGSVPPRGL 600 NNEIASHENT NGKNGASSGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242722 | 0.0 | AK242722.1 Oryza sativa Japonica Group cDNA, clone: J090045F10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639050.1 | 0.0 | two-component response regulator ORR27 | ||||
Swissprot | Q75HW2 | 0.0 | ORR27_ORYSJ; Two-component response regulator ORR27 | ||||
TrEMBL | A0A0D3G7B5 | 0.0 | A0A0D3G7B5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1PVD9 | 0.0 | I1PVD9_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0133700.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART05G15490.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15962 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 3e-19 | response regulator 2 |
Publications ? help Back to Top | |||
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