![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART04G23870.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
LFY |
Protein Properties |
Length: 389aa MW: 42544.3 Da PI: 8.4779 |
Description |
LFY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART04G23870.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Oba&pid=OBART04G23870.1) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | FLO_LFY | 545.2 | 2.3e-166 | 1 | 378 | 1 | 386 |
FLO_LFY 1 mdpea.fsas.lfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmks 92
mdp++ fsa+ f+wd + +pa + + ++ a+ releel+ +yGvr++tva+i+elGft+stL+ m+++eldd+m++
OBART04G23870.1 1 MDPNDaFSAAhPFRWDLGPP---APAPVPPPPPPPP------PPPPANVPRELEELVAGYGVRMSTVARISELGFTASTLLAMTERELDDMMAA 85
777654776559****5322...2223322222222......234566789******************************************* PP
FLO_LFY 93 lseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekk 186
l+ +fr+dll+Ger+G++aa+raer rl++ +++ +++ +++d +sqe+lsee++ +agsgg+g +++ +++ kk+ ++ +
OBART04G23870.1 86 LAGLFRWDLLLGERFGLRAALRAERGRLMSLG--GRHH---GHQSGSTVDGASQEVLSEEHD-----MAGSGGMGDDDNGRRMVTGKKQAKKGS 169
*****************************965..5555...6788899***********976.....678888888888887777766666666 PP
FLO_LFY 187 kaskk.kqkrkkkkelkseededeeeeededeeg........sgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiak 271
a+k k++rkk ++l+ + +ede + ded+ g +g +g erqrehPf+vtepgevar+kknGLDYLf+LyeqCr fLlqvq++ak
OBART04G23870.1 170 AARKGkKARRKKVDDLRLDMQEDEMDCCDEDGGGgsestessAGGGGGERQREHPFVVTEPGEVARAKKNGLDYLFHLYEQCRLFLLQVQSMAK 263
555543667777777666644444443333333334455554888899********************************************** PP
FLO_LFY 272 erGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprL 365
+G+k+Ptkvtnqvfryakk+gasyinkPkmrhYvhCYalhcLdeeas+alrra+k+rgenvGawrqacy+plv+i+ar+g+didavf+ahprL
OBART04G23870.1 264 LHGHKSPTKVTNQVFRYAKKVGASYINKPKMRHYVHCYALHCLDEEASDALRRAYKARGENVGAWRQACYAPLVDISARHGFDIDAVFAAHPRL 357
********************************************************************************************** PP
FLO_LFY 366 siWYvPtkLrqLChlerskas 386
+iWYvPt+LrqLCh++rs+++
OBART04G23870.1 358 AIWYVPTRLRQLCHQARSSHA 378
******************986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity |
GO:0010582 | Biological Process | floral meristem determinacy |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0031490 | Molecular Function | chromatin DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
Protein Sequence Length: 389 aa
Download sequence Send
to blast |
MDPNDAFSAA HPFRWDLGPP APAPVPPPPP PPPPPPPANV PRELEELVAG YGVRMSTVAR 60 ISELGFTAST LLAMTERELD DMMAALAGLF RWDLLLGERF GLRAALRAER GRLMSLGGRH 120 HGHQSGSTVD GASQEVLSEE HDMAGSGGMG DDDNGRRMVT GKKQAKKGSA ARKGKKARRK 180 KVDDLRLDMQ EDEMDCCDED GGGGSESTES SAGGGGGERQ REHPFVVTEP GEVARAKKNG 240 LDYLFHLYEQ CRLFLLQVQS MAKLHGHKSP TKVTNQVFRY AKKVGASYIN KPKMRHYVHC 300 YALHCLDEEA SDALRRAYKA RGENVGAWRQ ACYAPLVDIS ARHGFDIDAV FAAHPRLAIW 360 YVPTRLRQLC HQARSSHAAA AAALPPPLF
|
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G61850.1 | 1e-97 | floral meristem identity control protein LEAFY (LFY) |