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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART04G10400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 91aa MW: 9880.41 Da PI: 9.0548 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.6 | 5.2e-16 | 32 | 82 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE..-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif..sstgklyeys 50 rie+ +r + f kR++g+ KKAeEL vLCda v +++ s +++l+ ++ OBART04G10400.1 32 RIEDRVRRGICFRKRLAGLEKKAEELAVLCDAHVGFVVLscSDDDRLHHFA 82 8*********************************87776225788888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.7E-13 | 23 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.082 | 23 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-16 | 24 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-11 | 25 | 45 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-18 | 32 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-11 | 45 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-11 | 60 | 81 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MAAARGCLAS PGSGASDWEV GMGRRGRVVL RRIEDRVRRG ICFRKRLAGL EKKAEELAVL 60 CDAHVGFVVL SCSDDDRLHH FAAPATYALS P |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR855097 | 1e-137 | CR855097.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0075F02, complete sequence. | |||
GenBank | CR855115 | 1e-137 | CR855115.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0148P16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637115.1 | 1e-25 | truncated transcription factor CAULIFLOWER D-like isoform X1 | ||||
Refseq | XP_015637118.1 | 1e-25 | truncated transcription factor CAULIFLOWER D-like isoform X2 | ||||
Refseq | XP_025880634.1 | 4e-26 | MADS-box transcription factor 33-like isoform X3 | ||||
Refseq | XP_025880635.1 | 4e-26 | MADS-box transcription factor 33-like isoform X4 | ||||
TrEMBL | A0A0D3FV42 | 3e-58 | A0A0D3FV42_9ORYZ; Uncharacterized protein | ||||
STRING | OBART04G10400.1 | 6e-59 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15493 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 1e-10 | MIKC_MADS family protein |