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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART03G06050.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
ERF |
Protein Properties |
Length: 307aa MW: 33985.9 Da PI: 5.4227 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART03G06050.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 60 | 5.6e-19 | 101 | 151 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GVr+++ +gr++AeIrdp++ +r++lg++g+aeeAa a+++ +++++g
OBART03G06050.1 101 SKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAMAYDREARRIRG 151
89********.7*********954...4************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MCGGAILADF TPARVPRRLT AAELLPVTPT PPAAERRTTR KRKSDVDFEA EFELFEDDDD 60 DDEFELSDDG DEISSDVSSS SRPRRRVAAA AAGRRKASKK SKYRGVRRRP SGRFAAEIRD 120 PKKGRRVWLG TYGSAEEAAM AYDREARRIR GKGARLNFPR DGDGSPRRSN DRPCWTIDLN 180 LPAAAVSGDD DDAMTVDAAD ADAGSAGRAA AYADQEALSA AKCKIKQCPR DEQMASATPE 240 LMEEDASSSR NMVPLSMALQ LQYAAMIAEC DREMEEIAAV ERDLERRRRQ VFERRGHLVR 300 QASLLLD
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 38 | 43 | TRKRKS |
2 | 94 | 109 | RKASKKSKYRGVRRRP |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ304840 | 0.0 | AJ304840.1 Oryza sativa mRNA for ethylene responsive protein (ebp-89 gene). |
GenBank | AK073133 | 0.0 | AK073133.1 Oryza sativa Japonica Group cDNA clone:J033023E13, full insert sequence. |
GenBank | AY323478 | 0.0 | AY323478.1 Oryza sativa (japonica cultivar-group) ap2 domain containing protein (cap2) mRNA, complete cds. |