PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G24000.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 659aa    MW: 69124.6 Da    PI: 6.8724
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G24000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.31.2e-10302358155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  OBART02G24000.1 302 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 358
                      57*******************5444.2455535555.7799999*************98 PP
2AP249.88.3e-16401452155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  OBART02G24000.1 401 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 452
                      89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.07E-14302368IPR016177DNA-binding domain
CDDcd000181.37E-16302368No hitNo description
PfamPF008473.5E-8302358IPR001471AP2/ERF domain
SMARTSM003805.8E-22303372IPR001471AP2/ERF domain
PROSITE profilePS5103217.108303366IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-11303367IPR001471AP2/ERF domain
PRINTSPR003673.3E-6304315IPR001471AP2/ERF domain
CDDcd000185.88E-23401462No hitNo description
SuperFamilySSF541715.3E-18401462IPR016177DNA-binding domain
PfamPF008472.9E-10401452IPR001471AP2/ERF domain
SMARTSM003808.1E-34402466IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-18402461IPR001471AP2/ERF domain
PROSITE profilePS5103219.467402460IPR001471AP2/ERF domain
PRINTSPR003673.3E-6442462IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MASANNWLGF SLSGQENPQP HQDSSPPAAI DISGAGDFYG LPTSQPTAAD AHLGVAGHHH  60
NASYGIMEAF NRGAQEAQDW NMRGLDYNGG ASELSMLVGS SGGKRAAAVE ETEPKLEDFL  120
GGNSFVSEQD HHAAGGFLFS GVPMASSTNS NSGSNTMELS MIKTWLRNNG QVPAGHQPQQ  180
QQPAAAAAAA QQQAHEAAEM STDASASSFG CSSDAMGRSN NGGAVSAAAG GTSSQSLALS  240
MSTGSHSHLP IVVAGGGNAS GGAAESTSSE NKRASGAMDS PGGGAIEAVP RKSIDTFGQR  300
TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQGGYD KEDKAARAYD LAALKYWGTT  360
TTTNFPISNY EKELDEMKHM TRQEYIAYLR RNSSGFSRGA SKYRGVTRHH QHGRWQARIG  420
RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL ESSTLPVGGA  480
ARRLKEAADH AEAAGATIWR AADMDGAGVI SGLADVGMGA YAASYHHRHH HHGWPTIAFQ  540
QPPPLAVHYP YGQAPAAPSR GWCKPEQDAA GLGGNAFLMP ASTVVADQGH SSTATNHGST  600
CSYGNEEQGK LIGYDAMAMA SGAAGGGYQL SQGSASTVSI ARANGYSANW SSPFNGAMG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047470.0AP004747.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0407A09.
GenBankAP0053000.0AP005300.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ2055_H10.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623974.10.0AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A0D3F7L00.0A0A0D3F7L0_9ORYZ; Uncharacterized protein
STRINGOBART02G24000.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-121AP2 family protein