PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G05990.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 801aa    MW: 89863 Da    PI: 7.7293
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G05990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.4e-09739337
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                      W+++E  ++++a +++G++ Wk++++ +g g+++
  OBART01G05990.1  7 QWSKDELMRFYEAYRRHGKN-WKKVSASVG-GKSA 39
                     6*****************99.*********.9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.91360IPR017884SANT domain
SuperFamilySSF466891.2E-8651IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-4742IPR009057Homeodomain-like
PfamPF002492.5E-7740IPR001005SANT/Myb domain
CDDcd001671.20E-4839No hitNo description
SMARTSM011351.8E-17446535IPR033471DIRP domain
PfamPF065841.2E-21446512IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MSDLGPQWSK DELMRFYEAY RRHGKNWKKV SASVGGKSAD TVEALYSVHR TFLSLPEREG  60
TAMGFVALVT GHHNVSDESK SHKGSDQTVR ASGKVRKREA TGQKEKEAPH AHRSYHERRT  120
SGLSSFKKRY YGELVKNIPR HPSGKRTPRV PVIFPADMNV AHAGIPETEN AINCTKKASG  180
ATNNELECSS HGSPGISESA KFVQGQTFLE AKGTGSLKKR RIEQSMEQGQ TIKDEHETAM  240
VAKEGNDLTE YQRLTNLFSP DEMLVLDVLE SLVTVPSKIS EPKINIPSGT LGRDDSALSH  300
RREEGPSVKR SKQGKQVGEC SASKTRNKRR KKLIAEEVPT EGVTSNHLDL PEERQVDATE  360
CALNSDLERG TVDLPESTAN ISTKIPDLPS QLKPEINMSR RSKRKSKSPC GSKYVVCNGA  420
DNLQARRLQH CLSSESLRRW CTYEWFYSAV DYPWFMDNEF VNYLNFANLS HLSRLTRSEW  480
STIRSSLGKP RRFSDHFLAA EKDKLENYRK KVIVRHPSTR ELCDGKVVMM EQDRYNVQFD  540
RPDLGVDEVK DTDCMPVNWL DNLPDDLKKR SFLSNNSHNR VEVEQIPKLT SKENWDHISG  600
EAEPSKTMHI TSDEQVEIAV DIERLSNKST SGNCGPLQPL QSVDDNVRSR GLSEHRNGHN  660
DELDSYITSF VQMSLAQAKQ MVDEAMKEIS ENGKSSLEET GISNEACKGP EPESAANSEL  720
PRNLIFNCIA TILAIKHFSE GRHPPPNIAG VLERACLMLR PSCAENLPIY NEIENFIAVI  780
KNQILALVPS ASSNARLPMY M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305312PSVKRSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0644720.0AK064472.1 Oryza sativa Japonica Group cDNA clone:002-110-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619153.10.0protein ALWAYS EARLY 2 isoform X2
TrEMBLA0A0D3EKL50.0A0A0D3EKL5_9ORYZ; Uncharacterized protein
STRINGOBART01G05990.30.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.26e-49DNA binding