PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB12G25330.1

Common Name

LOC102713788

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 827aa MW: 90430 Da PI: 6.1226

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB12G25330.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.9e-18	5	60	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ OB12G25330.1 5 AYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 60 68****************************************************97 PP
2	START	170.9	8.4e-54	150	357	2	204
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmva 96 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++++ vi +g g+++l+++ OB12G25330.1 150 IAEETLAEFMSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDIIHVIPTGngGTIELIYM 245 68999***************************************************.8888888888************************ PP XXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHH CS START 97 elqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgl 189 +++a+++l++ Rdf+++Ry+ l++g++vi+++S+++ + p+ +++++Rae+lpSg+li+p+++g+s + +v+hvdl++++++++lr+l++s OB12G25330.1 246 QTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLDAWSVPEVLRPLYESPK 342 ****999************************9999999*********************************************** PP HHHHHHHHHHTXXXX CS START 190 aegaktwvatlqrqc 204 + ++k++ a+l++ + OB12G25330.1 343 ILAQKMTIAALRHIR 357 ********99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.483	1	61	IPR001356	Homeobox domain
SMART	SM00389	5.8E-11	2	65	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.1E-18	5	60	IPR009057	Homeodomain-like
Pfam	PF00046	1.9E-15	5	60	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-15	5	64	IPR009057	Homeodomain-like
CDD	cd00086	1.45E-15	6	62	No hit	No description
CDD	cd14686	7.98E-6	54	93	No hit	No description
PROSITE profile	PS50848	27.005	140	340	IPR002913	START domain
CDD	cd08875	2.95E-68	144	360	No hit	No description
Gene3D	G3DSA:3.30.530.20	4.2E-24	148	340	IPR023393	START-like domain
SMART	SM00234	6.6E-45	149	359	IPR002913	START domain
Pfam	PF01852	1.1E-51	150	357	IPR002913	START domain
SuperFamily	SSF55961	1.92E-38	150	360	No hit	No description
SuperFamily	SSF55961	4.12E-5	397	481	No hit	No description
SuperFamily	SSF55961	4.12E-5	511	584	No hit	No description
SuperFamily	SSF55961	4.12E-5	620	629	No hit	No description
Pfam	PF08670	1.6E-46	684	826	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence Send to blast
MAAAAYTPEQ VEALERVYTE CPKPSSLRRQ QLIRECPILS NIEPKQIKVW FQNRRCREKQ 60 RKEASRLQTV NRKLNAMNKL LMEENDRLQK QVSRLVYENG YMRTQLHNPS AATTDTSCES 120 VVTSSQHQQQ NPAVLHPQRD ANNPAGLLAI AEETLAEFMS KATGTAVEWV QMVGMKPGPD 180 SIGIIAVSHN CSGVAARACG LVSLEPTKVA EILKDRPSWY RDCRCVDIIH VIPTGNGGTI 240 ELIYMQTYAP TTLAAPRDFW TLRYTSGLED GSLVICERSL TQSTGGPSGP NTPNFIRAEV 300 LPSGYLIRPC EGGGSMIYIV DHVDLDAWSV PEVLRPLYES PKILAQKMTI AALRHIRQIA 360 HESSGEIPYG AGRQPAVFRT FSQRLSRGFN DAVSGFPDDG WSLLSSDGSE DITISVNSSP 420 NKLVGSHVSP NPLFSTVGGG ILCAKASMLL QNVPPALLVR FLREHRSEWA DPGVDAYSAA 480 SLRASPYTVP GLRTSGFMGS QVILPLAHTL EHEEFLEVIR LEGHGFSHDE VLLSRDMYLL 540 QLCSGVDENA TSASAQLVFA PIDESFADDA PLLPSGFRVI PLDTKMDVPS ATRTLDLASA 600 LEVGPGGASR ASTDASGVCN RSVLTIAFQF SYENHLRDSV AAMARNYVRA VMASVQRVAV 660 AIAPSRLGPQ IGMKHPPASP EALTLASWIG RSYRVHTGAD IRWSDTEDAD SPLALLWKHN 720 DAILCCSLKP APMFTFANNA GLDILETTLV NLQDISLEMI LDDEGRKALC SEFPKIMQQG 780 FTYLPGGVCK SSMGRQASYE QAVAWKVLSD DDAPHCLAFM LVNWTFM

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence Send to blast

MAAAAYTPEQ VEALERVYTE CPKPSSLRRQ QLIRECPILS NIEPKQIKVW FQNRRCREKQ  60
RKEASRLQTV NRKLNAMNKL LMEENDRLQK QVSRLVYENG YMRTQLHNPS AATTDTSCES  120
VVTSSQHQQQ NPAVLHPQRD ANNPAGLLAI AEETLAEFMS KATGTAVEWV QMVGMKPGPD  180
SIGIIAVSHN CSGVAARACG LVSLEPTKVA EILKDRPSWY RDCRCVDIIH VIPTGNGGTI  240
ELIYMQTYAP TTLAAPRDFW TLRYTSGLED GSLVICERSL TQSTGGPSGP NTPNFIRAEV  300
LPSGYLIRPC EGGGSMIYIV DHVDLDAWSV PEVLRPLYES PKILAQKMTI AALRHIRQIA  360
HESSGEIPYG AGRQPAVFRT FSQRLSRGFN DAVSGFPDDG WSLLSSDGSE DITISVNSSP  420
NKLVGSHVSP NPLFSTVGGG ILCAKASMLL QNVPPALLVR FLREHRSEWA DPGVDAYSAA  480
SLRASPYTVP GLRTSGFMGS QVILPLAHTL EHEEFLEVIR LEGHGFSHDE VLLSRDMYLL  540
QLCSGVDENA TSASAQLVFA PIDESFADDA PLLPSGFRVI PLDTKMDVPS ATRTLDLASA  600
LEVGPGGASR ASTDASGVCN RSVLTIAFQF SYENHLRDSV AAMARNYVRA VMASVQRVAV  660
AIAPSRLGPQ IGMKHPPASP EALTLASWIG RSYRVHTGAD IRWSDTEDAD SPLALLWKHN  720
DAILCCSLKP APMFTFANNA GLDILETTLV NLQDISLEMI LDDEGRKALC SEFPKIMQQG  780
FTYLPGGVCK SSMGRQASYE QAVAWKVLSD DDAPHCLAFM LVNWTFM

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB12G25330.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU368712	0.0	EU368712.1 Oryza sativa Indica Group SKIP interacting protein 22 (SIP22) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006664738.1	0.0	PREDICTED: homeobox-leucine zipper protein HOX33
Swissprot	A2ZMN9	0.0	HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
Swissprot	Q2QM96	0.0	HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBL	J3NEX5	0.0	J3NEX5_ORYBR; Uncharacterized protein
STRING	OB12G25330.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP374	38	197

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Entrez Gene	102713788

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Itoh J,Hibara K,Sato Y,Nagato Y Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825] Luan W, et al. Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice. Sci China Life Sci, 2013. 56(12): p. 1113-23 [PMID:24302292]