PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G24780.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 308aa    MW: 33902.7 Da    PI: 5.8565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G24780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.7e-18124174255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   g++GV+++    rW+AeIrd ++   +  rf++g+f+taeeAa+a++a +++++g
  OB12G24780.1 124 GFRGVHQRT-YERWAAEIRDTVI---KgSRFWIGTFDTAEEAARAYDATARRIFG 174
                   89****999.8*********333...35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.49E-20124183IPR016177DNA-binding domain
PfamPF008471.2E-10124172IPR001471AP2/ERF domain
PROSITE profilePS5103220.139124182IPR001471AP2/ERF domain
SMARTSM003801.0E-21124188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-25125183IPR001471AP2/ERF domain
CDDcd000181.54E-21125184No hitNo description
PRINTSPR003676.4E-7125136IPR001471AP2/ERF domain
PRINTSPR003676.4E-7148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MALEKEEEEY DEVEEQEEDD DRRRFEEEFL RFSMMEDQED DDEVLAVSPP RRPPAFGARV  60
ANHCINQNVI WSLGYYLPTL RVNFDTLANT TSTVQSVTML ETGGDGTKAK RRRGGARRPA  120
SKHGFRGVHQ RTYERWAAEI RDTVIKGSRF WIGTFDTAEE AARAYDATAR RIFGRNAKTN  180
FPADDTCPAP PPAAKTTTPC SSSKRPKKHN MIGGSAAPRC RRGGDHGAAA PPQAAVADGS  240
VHLASHPPAP AAVDMLSLST AAAQALEVTA GWEFEPFFQE LLVGVSPLEH YRGSGKEHVA  300
GGLDLWSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-14115182472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G24780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664719.21e-164PREDICTED: ethylene-responsive transcription factor RAP2-2-like
TrEMBLJ3NES00.0J3NES0_ORYBR; Uncharacterized protein
STRINGOB12G24780.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15980813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-09ERF family protein