PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB11G12830.1 | ||||||||
Common Name | LOC102722429 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 282aa MW: 30293.6 Da PI: 6.7199 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133.2 | 1.8e-41 | 20 | 151 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +pGfrF Pt+eel+ +yL+++++g++ ++e+vi+ vd+y ++P++L + + a ++++w+fF++r++++ +g r+ r+t sgyWkatg+ v OB11G12830.1 20 APGFRFYPTEEELLAFYLRHRLAGTRPDVERVIPVVDVYAYHPSQLAAmagE--AsvrDTEQWFFFCPRAERELHGGRPARTTPSGYWKATGSPSCV 114 69***************************99***************843442..13335569*******************************9999 PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ +++++g+k+t+vfy+grap+g+kt+W m+ey++ OB11G12830.1 115 ISSaTNRVIGVKRTMVFYHGRAPTGTKTRWKMNEYKA 151 98868889***************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-46 | 17 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.531 | 19 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.6E-23 | 21 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 282 aa Download sequence Send to blast |
MMAATTSSSS SGSSSDPFAA PGFRFYPTEE ELLAFYLRHR LAGTRPDVER VIPVVDVYAY 60 HPSQLAAMAG EASVRDTEQW FFFCPRAERE LHGGRPARTT PSGYWKATGS PSCVISSATN 120 RVIGVKRTMV FYHGRAPTGT KTRWKMNEYK AVADDHHAAV LHPMAPPGLR NELGVCRVYI 180 STGTLRSFDR RPLDNQAAGA FHPQAPSSSA TATANTSFAG ARGDNSRESS SSGSRELVGD 240 GPEDDAIDWS SLISSAAVDG GDDFGLIADG FNPSILGSWP QL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-29 | 21 | 152 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-29 | 21 | 152 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-29 | 21 | 152 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-29 | 21 | 152 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-29 | 21 | 152 | 22 | 146 | NAC domain-containing protein 19 |
3swm_B | 2e-29 | 21 | 152 | 22 | 146 | NAC domain-containing protein 19 |
3swm_C | 2e-29 | 21 | 152 | 22 | 146 | NAC domain-containing protein 19 |
3swm_D | 2e-29 | 21 | 152 | 22 | 146 | NAC domain-containing protein 19 |
3swp_A | 2e-29 | 21 | 152 | 22 | 146 | NAC domain-containing protein 19 |
3swp_B | 2e-29 | 21 | 152 | 22 | 146 | NAC domain-containing protein 19 |
3swp_C | 2e-29 | 21 | 152 | 22 | 146 | NAC domain-containing protein 19 |
3swp_D | 2e-29 | 21 | 152 | 22 | 146 | NAC domain-containing protein 19 |
4dul_A | 2e-29 | 21 | 152 | 19 | 143 | NAC domain-containing protein 19 |
4dul_B | 2e-29 | 21 | 152 | 19 | 143 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB11G12830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK106277 | 0.0 | AK106277.1 Oryza sativa Japonica Group cDNA clone:002-100-H06, full insert sequence. | |||
GenBank | AK109939 | 0.0 | AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006662743.1 | 0.0 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 3e-69 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | J3N647 | 0.0 | J3N647_ORYBR; Uncharacterized protein | ||||
STRING | OB11G12830.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G44350.2 | 3e-64 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 102722429 |
Publications ? help Back to Top | |||
---|---|---|---|
|