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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OB07G27140.1 |
| Common Name | LOC102706023 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 250aa MW: 28200.8 Da PI: 9.8913 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB07G27140.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 96.1 | 1.6e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rienk+nrqvtfskRrng+lKKA E+SvLCda+va+i+fs++gklye+ss
OB07G27140.1 10 RIENKINRQVTFSKRRNGLLKKAREISVLCDADVALIVFSTKGKLYEFSS 59
8***********************************************96 PP
|
| 2 | K-box | 92.9 | 5.3e-31 | 84 | 171 | 10 | 97 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
+++++e++ e+ Lk++++ Lq++qR+llGe+L++L+ keLqqLe+qLe+slk+iRskKn+ll+e+i+elqkkek+l+++n L+k
OB07G27140.1 84 NTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTTKELQQLEHQLEHSLKHIRSKKNQLLFESISELQKKEKSLKNQNSVLQKL 171
56789******************************************************************************99875 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010077 | Biological Process | maintenance of inflorescence meristem identity |
| GO:0010154 | Biological Process | fruit development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 250 aa
Download sequence Send
to blast |
MGRGPVQLRR IENKINRQVT FSKRRNGLLK KAREISVLCD ADVALIVFST KGKLYEFSSH 60
SSMEGILERY QRYSFDEKAA LDPNTEDQEN WGDEYGILKS KLDALQKSQR QLLGEQLDTL 120
TTKELQQLEH QLEHSLKHIR SKKNQLLFES ISELQKKEKS LKNQNSVLQK LMETEKKKIN 180
VAANTHREEQ NITTASTSSP TPVAAPESTP TINAGQNQPR GSGESEAQPS PAQASSSKLP 240
PWMLRTVSNT
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
| UniProt | Probable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot. {ECO:0000269|PubMed:11971906, ECO:0000269|PubMed:15299121}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF091458 | 0.0 | AF091458.1 Oryza sativa MADS box transcription factor MADS18 (MADS18) mRNA, complete cds. |
| Publications
? help Back to Top |
- Jia H, et al.
Characterization and transcriptional profiles of two rice MADS-box genes.
Plant Sci., 2000. 155(2): p. 115-122
[PMID:10814814] - Chen C, et al.
Adapting rice anther culture to gene transformation and RNA interference.
Sci. China, C, Life Sci., 2006. 49(5): p. 414-28
[PMID:17172048] - Yoshida H, et al.
superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice.
Plant Biotechnol. J., 2007. 5(6): p. 835-46
[PMID:17764519] - Yao SG,Ohmori S,Kimizu M,Yoshida H
Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development.
Plant Cell Physiol., 2008. 49(5): p. 853-7
[PMID:18378529] - Seok HY, et al.
Rice ternary MADS protein complexes containing class B MADS heterodimer.
Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604
[PMID:20888318] - Kobayashi K, et al.
Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
Plant Cell, 2012. 24(5): p. 1848-59
[PMID:22570445] - Wei X, et al.
Fine mapping of BH1, a gene controlling lemma and palea development in rice.
Plant Cell Rep., 2013. 32(9): p. 1455-63
[PMID:23689259] - Wang H, et al.
OsMADS32 interacts with PI-like proteins and regulates rice flower development.
J Integr Plant Biol, 2015. 57(5): p. 504-13
[PMID:25081486] - Lombardo F, et al.
The superwoman1-cleistogamy2 mutant is a novel resource for gene containment in rice.
Plant Biotechnol. J., 2017. 15(1): p. 97-106
[PMID:27336225]
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