PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G24210.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 375aa    MW: 38995 Da    PI: 4.6019
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G24210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.93.5e-27180235357
                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                   D ++WrKYGqK++kgs++pr+YYrC+s+ +C ++k+ver++ dp++++ tY+g H 
  OB06G24210.1 180 DSWAWRKYGQKPIKGSPYPRGYYRCSSNkNCGARKQVERCRVDPSFLVLTYTGAHS 235
                   99*************************99**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-28165235IPR003657WRKY domain
SuperFamilySSF1182901.44E-23175236IPR003657WRKY domain
SMARTSM007741.3E-31178239IPR003657WRKY domain
PfamPF031061.6E-22180235IPR003657WRKY domain
PROSITE profilePS5081127.439180240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDGDAWWYGG AGGGGVGGGN NWDLDAIVRF GCGGGHVTVP PPECEYDDPF SSLLVPPMTH  60
QVMPVWGDDD DVAAWMAPLP GLQTGGWDGA DHVVVDDLSG ALFGVSGQAP KLPAPPQVAA  120
AEVTPPNLVP AAADAAPVEK ITRPAIKQQA SGDGAGAGGS RKKQQAKEVV RVPANGPPPD  180
SWAWRKYGQK PIKGSPYPRG YYRCSSNKNC GARKQVERCR VDPSFLVLTY TGAHSGHDVP  240
LHRNSLAGTT RHKLVLPSNS CKPEQGAGAG AAEAGTTDKN ALATSSEAAS SSHSHSPAQS  300
TSPGLSPTTP LLTSSMEMHG EEEDCDDVDG AAGLQAEDVD MTIVDDDDAA DDTIHHVPWG  360
TPISDAIIAA SYEWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-161802401977Probable WRKY transcription factor 4
2lex_A6e-161802401977Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G24210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126141e-114CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656997.10.0PREDICTED: probable WRKY transcription factor 2
TrEMBLJ3MEH70.0J3MEH7_ORYBR; Uncharacterized protein
STRINGOB06G24210.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-35WRKY family protein