PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G35020.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 924aa    MW: 100988 Da    PI: 6.5064
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G35020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.99.7e-151051531357
                   HHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox  13 eeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                   e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OB03G35020.1 105 EALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 153
                   89*********************************************97 PP
2START171.74.7e-542444512204
                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEE CS
         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmva 96 
                   +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g  g+++l+++
  OB03G35020.1 244 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLHVIPTGngGTIELIYM 339
                   68999*****************************************************.8888888888**************************** PP

                   XXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHH CS
         START  97 elqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgl 189
                   +++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRa +lpSg+li+p+++g+s +++v+hvdl++++++++lr+l++s  
  OB03G35020.1 340 QTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRADVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPK 436
                   ********999****************************9999999*************************************************** PP

                   HHHHHHHHHHTXXXX CS
         START 190 aegaktwvatlqrqc 204
                   + ++k++ a+l++ +
  OB03G35020.1 437 ILAQKMTIAALRHIR 451
                   **********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.9E-699158IPR001356Homeobox domain
SuperFamilySSF466898.13E-13104157IPR009057Homeodomain-like
PROSITE profilePS5007113.718104154IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-14104153IPR009057Homeodomain-like
CDDcd000861.98E-12104155No hitNo description
PfamPF000462.7E-12105153IPR001356Homeobox domain
CDDcd146862.00E-6147186No hitNo description
PROSITE profilePS5084826.858234434IPR002913START domain
CDDcd088751.60E-69238454No hitNo description
Gene3DG3DSA:3.30.530.206.0E-24242434IPR023393START-like domain
SMARTSM002342.6E-46243453IPR002913START domain
PfamPF018528.3E-52244451IPR002913START domain
SuperFamilySSF559611.65E-38244454No hitNo description
PfamPF086703.8E-49779923IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 924 aa     Download sequence    Send to blast
MSPTRLVGRE ANKTNNKDVM HDGCATEYKY PRVDQGSLDT YLLDSNLIHG PKTDTSPNNN  60
LNAKLFLGDT EDHNPSNSLL PLMRSTLTIN LLKESVILNL TIWVEALERV YSECPKPSSL  120
RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR  180
LQKQVSRLVY ENGYMRQQLH NPSVATTDTS CESVVTSGQH HQQQNPAAAR PQRDANNPAG  240
LLAIAEETLA EFLSKATGTA VDWVQMVGMK PGPDSIGIIA VSHNCSGVAA RACGLVSLEP  300
TKVAEILKDR PSWYRDCRCV DVLHVIPTGN GGTIELIYMQ TYAPTTLAAP RDFWTLRYTS  360
GLEDGSLVIC ERSLTQSTGG PSGPNTPNFV RADVLPSGYL IRPCEGGGSM IHIVDHVDLD  420
AWSVPEVLRP LYESPKILAQ KMTIAALRHI RQIAHESSGE MPYGGGRQPA VLRTFSQRLS  480
RGFNDAVNGF PDDGWSPMSS DGAEDVTIAF NSSPNKLVGS HVNSSQLFSA IGGGILCAKA  540
SMLLQNVPPA LLVRFLREHR SEWADPGVDA YSAAALRASP YAVPGLRAGG FMGSQVILPL  600
AHTLEHEEFL EVIRLEGHSL CHDEVVLSRD MYLLQLCSGV DENAAGACAQ LVFAPIDESF  660
ADDAPLLPSG FRVIPLDAKA DAPSATRTLD LASTLEVGSG GTTRASSDTS GTCNTRSVLT  720
IAFQFSYENH LRESVAAMAR QYVRTVVASV QRVAMAIAPS RLGGQIETKH PPGSPEAHTL  780
ARWIGRSYRF HTGADLLRTD SQSTDSSLKA MWQHSDSIMC CSLKVSAAPV FTFANQAGLD  840
MLETTLIALQ DISLEKILDD DGRKALCSEF PKIMQQGLAY LPGGVCVSSM GRPVSYEQAV  900
AWKVLSDDDT PHCLAFMFVN WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G35020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032840.0AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689987.10.0PREDICTED: homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLJ3LR260.0J3LR26_ORYBR; Uncharacterized protein
STRINGOB03G35020.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]